Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6460 and GFF6461 are separated by 14 nucleotides GFF6461 and GFF6462 overlap by 4 nucleotides GFF6462 and GFF6463 are separated by 11 nucleotides
GFF6460 - Sensor protein BasS/PmrB (activates BasR/PmrA), at 37,377 to 38,732
GFF6460
GFF6461 - Thioesterase superfamily, at 38,747 to 39,169
GFF6461
GFF6462 - Integral membrane protein, at 39,166 to 40,065
GFF6462
GFF6463 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 40,077 to 40,859
GFF6463
Position (kb) 38
39
40 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 37.779 kb on + strand, within GFF6460 at 37.779 kb on + strand, within GFF6460 at 37.779 kb on + strand, within GFF6460 at 37.779 kb on + strand, within GFF6460 at 37.779 kb on + strand, within GFF6460 at 37.780 kb on - strand, within GFF6460 at 37.780 kb on - strand, within GFF6460 at 37.780 kb on - strand, within GFF6460 at 37.780 kb on - strand, within GFF6460 at 37.809 kb on + strand, within GFF6460 at 37.809 kb on + strand, within GFF6460 at 37.809 kb on + strand, within GFF6460 at 37.809 kb on + strand, within GFF6460 at 37.809 kb on + strand, within GFF6460 at 37.810 kb on - strand, within GFF6460 at 37.810 kb on - strand, within GFF6460 at 37.810 kb on - strand, within GFF6460 at 37.810 kb on - strand, within GFF6460 at 37.810 kb on - strand, within GFF6460 at 38.916 kb on + strand, within GFF6461 at 38.916 kb on + strand, within GFF6461 at 38.916 kb on + strand, within GFF6461 at 38.917 kb on - strand, within GFF6461 at 38.917 kb on - strand, within GFF6461 at 38.917 kb on - strand, within GFF6461 at 38.917 kb on - strand, within GFF6461 at 38.917 kb on - strand, within GFF6461 at 38.917 kb on - strand, within GFF6461 at 38.917 kb on - strand, within GFF6461 at 38.917 kb on - strand, within GFF6461 at 38.917 kb on - strand, within GFF6461 at 38.917 kb on - strand, within GFF6461 at 38.917 kb on - strand, within GFF6461 at 38.917 kb on - strand, within GFF6461 at 38.917 kb on - strand, within GFF6461 at 38.917 kb on - strand, within GFF6461 at 38.917 kb on - strand, within GFF6461 at 38.917 kb on - strand, within GFF6461 at 38.943 kb on + strand, within GFF6461 at 39.066 kb on + strand, within GFF6461 at 39.066 kb on + strand, within GFF6461 at 39.066 kb on + strand, within GFF6461 at 39.067 kb on - strand, within GFF6461 at 39.067 kb on - strand, within GFF6461 at 39.067 kb on - strand, within GFF6461 at 39.132 kb on + strand at 39.133 kb on - strand at 39.133 kb on - strand at 39.266 kb on + strand, within GFF6462 at 39.266 kb on + strand, within GFF6462 at 39.266 kb on + strand, within GFF6462 at 39.266 kb on + strand, within GFF6462 at 39.266 kb on + strand, within GFF6462 at 39.267 kb on - strand, within GFF6462 at 39.267 kb on - strand, within GFF6462 at 39.563 kb on + strand, within GFF6462 at 39.564 kb on - strand, within GFF6462 at 39.564 kb on - strand, within GFF6462 at 39.564 kb on - strand, within GFF6462 at 39.564 kb on - strand, within GFF6462 at 39.833 kb on + strand, within GFF6462 at 39.833 kb on + strand, within GFF6462 at 39.833 kb on + strand, within GFF6462 at 39.834 kb on - strand, within GFF6462 at 39.834 kb on - strand, within GFF6462 at 39.834 kb on - strand, within GFF6462 at 39.836 kb on + strand, within GFF6462 at 39.837 kb on - strand, within GFF6462
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 37,779 + GFF6460 0.30 -1.7 37,779 + GFF6460 0.30 -1.0 37,779 + GFF6460 0.30 -0.1 37,779 + GFF6460 0.30 +0.2 37,779 + GFF6460 0.30 +0.5 37,780 - GFF6460 0.30 -2.8 37,780 - GFF6460 0.30 -3.3 37,780 - GFF6460 0.30 +0.4 37,780 - GFF6460 0.30 +0.6 37,809 + GFF6460 0.32 +0.1 37,809 + GFF6460 0.32 +0.4 37,809 + GFF6460 0.32 -0.6 37,809 + GFF6460 0.32 +0.4 37,809 + GFF6460 0.32 +0.6 37,810 - GFF6460 0.32 -1.0 37,810 - GFF6460 0.32 +2.0 37,810 - GFF6460 0.32 +0.3 37,810 - GFF6460 0.32 -0.2 37,810 - GFF6460 0.32 +0.8 38,916 + GFF6461 0.40 +1.4 38,916 + GFF6461 0.40 -0.6 38,916 + GFF6461 0.40 +0.5 38,917 - GFF6461 0.40 -0.2 38,917 - GFF6461 0.40 +0.3 38,917 - GFF6461 0.40 -1.6 38,917 - GFF6461 0.40 +1.0 38,917 - GFF6461 0.40 -1.3 38,917 - GFF6461 0.40 -0.9 38,917 - GFF6461 0.40 -1.8 38,917 - GFF6461 0.40 -2.4 38,917 - GFF6461 0.40 -0.6 38,917 - GFF6461 0.40 -1.0 38,917 - GFF6461 0.40 -1.4 38,917 - GFF6461 0.40 -0.6 38,917 - GFF6461 0.40 -2.2 38,917 - GFF6461 0.40 -1.8 38,917 - GFF6461 0.40 -0.3 38,917 - GFF6461 0.40 -2.8 38,943 + GFF6461 0.46 -1.6 39,066 + GFF6461 0.75 -0.8 39,066 + GFF6461 0.75 -2.9 39,066 + GFF6461 0.75 -2.6 39,067 - GFF6461 0.76 +0.2 39,067 - GFF6461 0.76 +0.7 39,067 - GFF6461 0.76 +2.8 39,132 + -1.0 39,133 - +1.5 39,133 - -1.6 39,266 + GFF6462 0.11 -4.4 39,266 + GFF6462 0.11 +0.0 39,266 + GFF6462 0.11 +0.2 39,266 + GFF6462 0.11 +0.7 39,266 + GFF6462 0.11 -3.4 39,267 - GFF6462 0.11 -1.7 39,267 - GFF6462 0.11 +0.9 39,563 + GFF6462 0.44 -0.3 39,564 - GFF6462 0.44 -0.0 39,564 - GFF6462 0.44 +1.5 39,564 - GFF6462 0.44 +0.7 39,564 - GFF6462 0.44 -1.9 39,833 + GFF6462 0.74 +0.2 39,833 + GFF6462 0.74 +0.8 39,833 + GFF6462 0.74 -1.5 39,834 - GFF6462 0.74 +0.5 39,834 - GFF6462 0.74 -0.3 39,834 - GFF6462 0.74 -0.5 39,836 + GFF6462 0.74 +0.5 39,837 - GFF6462 0.75 -2.0
Or see this region's nucleotide sequence