Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6430 and GFF6431 are separated by 112 nucleotides GFF6431 and GFF6432 overlap by 4 nucleotides GFF6432 and GFF6433 are separated by 1 nucleotides
GFF6430 - L-carnitine dehydratase/bile acid-inducible protein F, at 3,345 to 4,517
GFF6430
GFF6431 - hypothetical protein, at 4,630 to 5,406
GFF6431
GFF6432 - no description, at 5,403 to 6,131
GFF6432
GFF6433 - hypothetical protein, at 6,133 to 11,397
GFF6433
Position (kb) 4
5
6 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3.787 kb on + strand, within GFF6430 at 3.787 kb on + strand, within GFF6430 at 3.787 kb on + strand, within GFF6430 at 3.787 kb on + strand, within GFF6430 at 3.787 kb on + strand, within GFF6430 at 3.787 kb on + strand, within GFF6430 at 3.788 kb on - strand, within GFF6430 at 3.788 kb on - strand, within GFF6430 at 3.788 kb on - strand, within GFF6430 at 3.788 kb on - strand, within GFF6430 at 3.788 kb on - strand, within GFF6430 at 3.788 kb on - strand, within GFF6430 at 3.809 kb on - strand, within GFF6430 at 3.919 kb on + strand, within GFF6430 at 4.072 kb on + strand, within GFF6430 at 4.073 kb on - strand, within GFF6430 at 4.541 kb on + strand at 4.542 kb on - strand at 4.542 kb on - strand at 4.554 kb on + strand at 4.631 kb on + strand at 4.748 kb on + strand, within GFF6431 at 4.749 kb on - strand, within GFF6431 at 4.749 kb on - strand, within GFF6431 at 4.749 kb on - strand, within GFF6431 at 4.916 kb on + strand, within GFF6431 at 5.159 kb on + strand, within GFF6431 at 5.336 kb on + strand at 5.530 kb on + strand, within GFF6432 at 5.531 kb on - strand, within GFF6432 at 6.284 kb on + strand at 6.285 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 3,787 + GFF6430 0.38 -0.8 3,787 + GFF6430 0.38 +0.8 3,787 + GFF6430 0.38 +1.8 3,787 + GFF6430 0.38 -0.2 3,787 + GFF6430 0.38 +0.8 3,787 + GFF6430 0.38 -3.5 3,788 - GFF6430 0.38 -2.6 3,788 - GFF6430 0.38 +3.2 3,788 - GFF6430 0.38 +0.8 3,788 - GFF6430 0.38 +0.2 3,788 - GFF6430 0.38 -0.1 3,788 - GFF6430 0.38 +0.8 3,809 - GFF6430 0.40 -1.9 3,919 + GFF6430 0.49 -0.8 4,072 + GFF6430 0.62 -0.1 4,073 - GFF6430 0.62 +1.6 4,541 + +0.1 4,542 - +0.8 4,542 - -1.0 4,554 + +2.6 4,631 + +1.2 4,748 + GFF6431 0.15 -0.6 4,749 - GFF6431 0.15 +0.6 4,749 - GFF6431 0.15 -1.2 4,749 - GFF6431 0.15 -0.2 4,916 + GFF6431 0.37 -1.1 5,159 + GFF6431 0.68 -0.1 5,336 + -3.0 5,530 + GFF6432 0.17 -3.2 5,531 - GFF6432 0.18 +0.2 6,284 + -1.2 6,285 - +0.6
Or see this region's nucleotide sequence