Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF637 and GFF638 are separated by 7 nucleotides GFF638 and GFF639 are separated by 118 nucleotides GFF639 and GFF640 are separated by 7 nucleotides GFF640 and GFF641 are separated by 112 nucleotides
GFF637 - Two-component system sensor histidine kinase/response regulator hybrid, at 686,771 to 690,163
GFF637
GFF638 - Two-component transcriptional response regulator, LuxR family, at 690,171 to 691,043
GFF638
GFF639 - hypothetical protein, at 691,162 to 691,932
GFF639
GFF640 - no description, at 691,940 to 692,419
GFF640
GFF641 - no description, at 692,532 to 693,050
GFF641
Position (kb) 691
692 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 690.255 kb on + strand at 690.325 kb on + strand, within GFF638 at 690.480 kb on + strand, within GFF638 at 690.480 kb on + strand, within GFF638 at 690.480 kb on + strand, within GFF638 at 690.481 kb on - strand, within GFF638 at 691.082 kb on - strand at 691.105 kb on - strand at 691.105 kb on - strand at 691.105 kb on - strand at 691.105 kb on - strand at 691.106 kb on + strand at 691.204 kb on + strand at 691.204 kb on + strand at 691.204 kb on + strand at 691.205 kb on - strand at 691.205 kb on - strand at 691.310 kb on - strand, within GFF639 at 691.336 kb on + strand, within GFF639 at 691.336 kb on + strand, within GFF639 at 691.337 kb on - strand, within GFF639 at 691.337 kb on - strand, within GFF639 at 691.351 kb on + strand, within GFF639 at 691.351 kb on + strand, within GFF639 at 691.352 kb on - strand, within GFF639 at 691.447 kb on + strand, within GFF639 at 691.447 kb on + strand, within GFF639 at 691.447 kb on + strand, within GFF639 at 691.447 kb on + strand, within GFF639 at 691.450 kb on + strand, within GFF639 at 691.615 kb on + strand, within GFF639 at 691.615 kb on + strand, within GFF639 at 691.615 kb on + strand, within GFF639 at 691.615 kb on + strand, within GFF639 at 691.615 kb on + strand, within GFF639 at 691.615 kb on + strand, within GFF639 at 691.616 kb on - strand, within GFF639 at 691.616 kb on - strand, within GFF639 at 691.616 kb on - strand, within GFF639 at 691.616 kb on - strand, within GFF639 at 691.636 kb on + strand, within GFF639 at 691.636 kb on + strand, within GFF639 at 691.636 kb on + strand, within GFF639 at 691.637 kb on - strand, within GFF639 at 691.637 kb on - strand, within GFF639 at 691.735 kb on + strand, within GFF639 at 691.735 kb on + strand, within GFF639 at 691.736 kb on - strand, within GFF639 at 691.736 kb on - strand, within GFF639 at 691.736 kb on - strand, within GFF639 at 691.736 kb on - strand, within GFF639 at 691.786 kb on + strand, within GFF639 at 691.897 kb on + strand at 691.898 kb on - strand at 691.898 kb on - strand at 691.900 kb on + strand at 691.900 kb on + strand at 692.005 kb on - strand, within GFF640 at 692.005 kb on - strand, within GFF640 at 692.221 kb on - strand, within GFF640 at 692.221 kb on - strand, within GFF640 at 692.518 kb on - strand at 692.518 kb on - strand at 692.534 kb on - strand at 692.860 kb on + strand, within GFF641
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 690,255 + -1.9 690,325 + GFF638 0.18 +1.0 690,480 + GFF638 0.35 -1.0 690,480 + GFF638 0.35 -0.3 690,480 + GFF638 0.35 -0.8 690,481 - GFF638 0.36 +0.4 691,082 - -1.6 691,105 - -3.1 691,105 - +0.3 691,105 - -0.9 691,105 - -0.4 691,106 + -2.9 691,204 + -0.3 691,204 + -0.8 691,204 + -0.2 691,205 - +1.9 691,205 - -0.6 691,310 - GFF639 0.19 +0.1 691,336 + GFF639 0.23 +4.0 691,336 + GFF639 0.23 -0.8 691,337 - GFF639 0.23 -0.2 691,337 - GFF639 0.23 +0.1 691,351 + GFF639 0.25 -0.7 691,351 + GFF639 0.25 -0.4 691,352 - GFF639 0.25 -3.3 691,447 + GFF639 0.37 +2.0 691,447 + GFF639 0.37 -2.0 691,447 + GFF639 0.37 -2.5 691,447 + GFF639 0.37 -2.4 691,450 + GFF639 0.37 -0.1 691,615 + GFF639 0.59 -2.3 691,615 + GFF639 0.59 +0.3 691,615 + GFF639 0.59 -2.5 691,615 + GFF639 0.59 +1.0 691,615 + GFF639 0.59 -2.3 691,615 + GFF639 0.59 -1.5 691,616 - GFF639 0.59 -0.5 691,616 - GFF639 0.59 +1.1 691,616 - GFF639 0.59 +1.5 691,616 - GFF639 0.59 +0.4 691,636 + GFF639 0.61 +0.2 691,636 + GFF639 0.61 -3.6 691,636 + GFF639 0.61 -1.8 691,637 - GFF639 0.62 -0.8 691,637 - GFF639 0.62 +1.5 691,735 + GFF639 0.74 -2.0 691,735 + GFF639 0.74 +1.2 691,736 - GFF639 0.74 -1.5 691,736 - GFF639 0.74 -2.9 691,736 - GFF639 0.74 -1.7 691,736 - GFF639 0.74 -0.6 691,786 + GFF639 0.81 -2.2 691,897 + -0.1 691,898 - +1.6 691,898 - -0.6 691,900 + +0.5 691,900 + -3.4 692,005 - GFF640 0.14 +1.3 692,005 - GFF640 0.14 -2.8 692,221 - GFF640 0.59 +0.2 692,221 - GFF640 0.59 -0.4 692,518 - -0.5 692,518 - +1.2 692,534 - -0.2 692,860 + GFF641 0.63 -1.8
Or see this region's nucleotide sequence