Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6365 and GFF6366 overlap by 4 nucleotides GFF6366 and GFF6367 overlap by 4 nucleotides
GFF6365 - T6SS AAA+ chaperone ClpV (TssH), at 32,389 to 35,109
GFF6365
GFF6366 - T6SS component TssG (ImpH/VasB), at 35,106 to 36,281
GFF6366
GFF6367 - T6SS component TssF (ImpG/VasA), at 36,278 to 38,149
GFF6367
Position (kb) 35
36
37 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 34.155 kb on + strand, within GFF6365 at 34.529 kb on + strand, within GFF6365 at 34.529 kb on + strand, within GFF6365 at 34.529 kb on + strand, within GFF6365 at 34.763 kb on + strand, within GFF6365 at 34.763 kb on + strand, within GFF6365 at 35.006 kb on + strand at 35.006 kb on + strand at 35.057 kb on + strand at 35.058 kb on - strand at 35.058 kb on - strand at 35.058 kb on - strand at 35.315 kb on - strand, within GFF6366 at 35.580 kb on + strand, within GFF6366 at 35.580 kb on + strand, within GFF6366 at 35.581 kb on - strand, within GFF6366 at 35.581 kb on - strand, within GFF6366 at 35.704 kb on + strand, within GFF6366 at 35.705 kb on - strand, within GFF6366 at 35.705 kb on - strand, within GFF6366 at 35.705 kb on - strand, within GFF6366 at 35.774 kb on - strand, within GFF6366 at 36.194 kb on - strand at 36.194 kb on - strand at 36.417 kb on + strand at 36.586 kb on - strand, within GFF6367 at 36.651 kb on + strand, within GFF6367 at 36.651 kb on + strand, within GFF6367 at 36.742 kb on + strand, within GFF6367 at 36.743 kb on - strand, within GFF6367 at 36.897 kb on + strand, within GFF6367 at 36.897 kb on + strand, within GFF6367 at 36.897 kb on + strand, within GFF6367 at 36.897 kb on + strand, within GFF6367 at 36.916 kb on - strand, within GFF6367 at 36.916 kb on - strand, within GFF6367 at 36.985 kb on - strand, within GFF6367
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 34,155 + GFF6365 0.65 -1.1 34,529 + GFF6365 0.79 -2.5 34,529 + GFF6365 0.79 +2.1 34,529 + GFF6365 0.79 -0.7 34,763 + GFF6365 0.87 +0.0 34,763 + GFF6365 0.87 -2.3 35,006 + -0.7 35,006 + +0.5 35,057 + -1.9 35,058 - -0.3 35,058 - +0.3 35,058 - +0.6 35,315 - GFF6366 0.18 -0.5 35,580 + GFF6366 0.40 +0.3 35,580 + GFF6366 0.40 -1.4 35,581 - GFF6366 0.40 -1.1 35,581 - GFF6366 0.40 -0.5 35,704 + GFF6366 0.51 -1.5 35,705 - GFF6366 0.51 +0.7 35,705 - GFF6366 0.51 +0.3 35,705 - GFF6366 0.51 -0.5 35,774 - GFF6366 0.57 +1.3 36,194 - +1.5 36,194 - +0.1 36,417 + +0.5 36,586 - GFF6367 0.16 -2.4 36,651 + GFF6367 0.20 -0.2 36,651 + GFF6367 0.20 +0.4 36,742 + GFF6367 0.25 +0.7 36,743 - GFF6367 0.25 +0.4 36,897 + GFF6367 0.33 +0.3 36,897 + GFF6367 0.33 +3.8 36,897 + GFF6367 0.33 -1.5 36,897 + GFF6367 0.33 +1.3 36,916 - GFF6367 0.34 +0.0 36,916 - GFF6367 0.34 +0.4 36,985 - GFF6367 0.38 -1.0
Or see this region's nucleotide sequence