Strain Fitness in Variovorax sp. SCN45 around GFF633
Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Community=arabino-guar; Passage=4 |
|---|---|---|---|---|---|
| remove | |||||
| 681,541 | + | -1.6 | |||
| 681,979 | + | GFF632 | 0.64 | -1.9 | |
| 681,979 | + | GFF632 | 0.64 | +0.7 | |
| 682,678 | + | GFF633 | 0.60 | -4.1 | |
| 682,679 | - | GFF633 | 0.60 | -1.6 | |
| 683,582 | + | GFF634 | 0.49 | -2.6 | |
| 683,583 | - | GFF634 | 0.49 | +2.4 | |
| 683,592 | - | GFF634 | 0.50 | -2.0 | |
| 683,592 | - | GFF634 | 0.50 | +0.1 | |
| 683,666 | + | GFF634 | 0.56 | +0.9 | |
| 683,732 | + | GFF634 | 0.62 | +0.4 | |
| 683,732 | + | GFF634 | 0.62 | +0.2 | |
| 683,733 | - | GFF634 | 0.62 | +0.8 |
Or see this region's nucleotide sequence