Strain Fitness in Variovorax sp. SCN45 around GFF63

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
79,114	+		GFF62	0.77	+1.3
79,114	+		GFF62	0.77	-0.8
79,252	+		GFF62	0.87	+1.5
79,253	-		GFF62	0.87	-1.8
79,439	+				-3.0
79,439	+				-1.5
79,439	+				-0.5
79,440	-				-0.7
79,440	-				-1.8
79,440	-				-2.7
79,448	+				+0.4
79,449	-				+0.1
79,449	-				-1.2
79,574	+		GFF63	0.13	+1.3
79,574	+		GFF63	0.13	-1.7
79,575	-		GFF63	0.13	-1.7
79,575	-		GFF63	0.13	-4.0
79,628	+		GFF63	0.18	+0.5
79,628	+		GFF63	0.18	-1.7
79,629	-		GFF63	0.18	+0.6
79,629	-		GFF63	0.18	-2.0
79,629	-		GFF63	0.18	-0.2
79,637	+		GFF63	0.19	-0.4
79,673	+		GFF63	0.22	+1.0
79,673	+		GFF63	0.22	-1.7
79,691	+		GFF63	0.24	-3.5
79,757	+		GFF63	0.30	-1.3
79,757	+		GFF63	0.30	+1.1
79,757	+		GFF63	0.30	-1.3
79,758	-		GFF63	0.30	-1.3
79,758	-		GFF63	0.30	-1.1
79,758	-		GFF63	0.30	+0.5
79,758	-		GFF63	0.30	-0.7
79,758	-		GFF63	0.30	+0.6
79,758	-		GFF63	0.30	-2.1
79,766	+		GFF63	0.31	-0.5
79,776	-		GFF63	0.32	+0.1
80,000	+		GFF63	0.53	-0.8
80,006	+		GFF63	0.53	+1.2
80,006	+		GFF63	0.53	-1.7
80,006	+		GFF63	0.53	-0.8
80,007	-		GFF63	0.53	-1.0
80,007	-		GFF63	0.53	-1.3
80,202	-		GFF63	0.71	-1.3
80,202	-		GFF63	0.71	-2.0
80,369	+		GFF63	0.87	-1.1
80,369	+		GFF63	0.87	-0.2
80,370	-		GFF63	0.87	-2.0
80,384	+		GFF63	0.88	+0.2
80,462	+				-2.2
80,463	-				+1.1
80,463	-				+1.1
80,642	-		GFF64	0.14	-3.2
80,642	-		GFF64	0.14	+1.8
80,642	-		GFF64	0.14	-1.4
80,765	-		GFF64	0.27	-2.3
80,765	-		GFF64	0.27	+0.9
80,887	+		GFF64	0.40	+1.5
80,888	-		GFF64	0.40	-1.1
80,888	-		GFF64	0.40	-2.8
81,058	+		GFF64	0.58	+0.2
81,058	+		GFF64	0.58	+0.9
81,058	+		GFF64	0.58	-0.0
81,058	+		GFF64	0.58	-1.7
81,058	+		GFF64	0.58	+1.0
81,059	-		GFF64	0.58	-0.2
81,059	-		GFF64	0.58	+4.8
81,214	+		GFF64	0.74	-0.5
81,214	+		GFF64	0.74	-1.3
81,214	+		GFF64	0.74	+1.4
81,215	-		GFF64	0.74	-1.8
81,215	-		GFF64	0.74	+0.2
81,215	-		GFF64	0.74	-0.8
81,477	+				+0.4
81,477	+				-1.8
81,477	+				+1.0
81,477	+				+0.6
81,477	+				-0.1
81,477	+				-0.4
81,477	+				+2.8
81,477	+				-1.6
81,478	-				-3.1
81,478	-				+1.7
81,478	-				-1.8
81,478	-				+0.5
81,478	-				+1.5
81,481	+				-3.5
81,482	-				-0.8
81,482	-				-0.1
81,506	+				-2.3