Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6267 and GFF6268 are separated by 98 nucleotides GFF6268 and GFF6269 are separated by 28 nucleotides
GFF6267 - Transcriptional regulator, LysR family, at 58,432 to 59,328
GFF6267
GFF6268 - BUG/TctC family periplasmic protein, at 59,427 to 60,446
GFF6268
GFF6269 - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases, at 60,475 to 62,187
GFF6269
Position (kb) 59
60
61 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 58.512 kb on + strand at 58.512 kb on + strand at 58.512 kb on + strand at 58.513 kb on - strand at 58.513 kb on - strand at 58.718 kb on + strand, within GFF6267 at 59.273 kb on + strand at 59.273 kb on + strand at 59.273 kb on + strand at 59.308 kb on - strand at 59.341 kb on + strand at 59.341 kb on + strand at 59.341 kb on + strand at 59.342 kb on - strand at 59.366 kb on - strand at 59.366 kb on - strand at 59.366 kb on - strand at 59.614 kb on + strand, within GFF6268 at 59.614 kb on + strand, within GFF6268 at 59.614 kb on + strand, within GFF6268 at 59.615 kb on - strand, within GFF6268 at 59.615 kb on - strand, within GFF6268 at 59.615 kb on - strand, within GFF6268 at 59.615 kb on - strand, within GFF6268 at 59.615 kb on - strand, within GFF6268 at 59.733 kb on + strand, within GFF6268 at 59.734 kb on - strand, within GFF6268 at 60.210 kb on + strand, within GFF6268 at 60.381 kb on + strand at 60.381 kb on + strand at 60.381 kb on + strand at 60.381 kb on + strand at 60.381 kb on + strand at 60.381 kb on + strand at 60.381 kb on + strand at 60.381 kb on + strand at 60.381 kb on + strand at 60.382 kb on - strand at 60.382 kb on - strand at 60.382 kb on - strand at 60.382 kb on - strand at 60.382 kb on - strand at 60.382 kb on - strand at 60.382 kb on - strand at 60.382 kb on - strand at 60.382 kb on - strand at 60.796 kb on + strand, within GFF6269 at 60.796 kb on + strand, within GFF6269 at 60.865 kb on + strand, within GFF6269 at 60.865 kb on + strand, within GFF6269 at 60.865 kb on + strand, within GFF6269 at 60.865 kb on + strand, within GFF6269 at 60.865 kb on + strand, within GFF6269 at 61.021 kb on + strand, within GFF6269 at 61.021 kb on + strand, within GFF6269 at 61.021 kb on + strand, within GFF6269 at 61.022 kb on - strand, within GFF6269 at 61.022 kb on - strand, within GFF6269 at 61.171 kb on + strand, within GFF6269 at 61.171 kb on + strand, within GFF6269 at 61.171 kb on + strand, within GFF6269 at 61.172 kb on - strand, within GFF6269 at 61.172 kb on - strand, within GFF6269 at 61.172 kb on - strand, within GFF6269 at 61.172 kb on - strand, within GFF6269 at 61.172 kb on - strand, within GFF6269 at 61.174 kb on + strand, within GFF6269 at 61.174 kb on + strand, within GFF6269 at 61.175 kb on - strand, within GFF6269 at 61.175 kb on - strand, within GFF6269 at 61.175 kb on - strand, within GFF6269 at 61.175 kb on - strand, within GFF6269 at 61.333 kb on + strand, within GFF6269 at 61.334 kb on - strand, within GFF6269
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 58,512 + -0.9 58,512 + +1.9 58,512 + -0.8 58,513 - +1.4 58,513 - +2.6 58,718 + GFF6267 0.32 -1.3 59,273 + -1.8 59,273 + -2.6 59,273 + +0.2 59,308 - -1.7 59,341 + +0.1 59,341 + +2.2 59,341 + +0.2 59,342 - +0.2 59,366 - -1.4 59,366 - +1.3 59,366 - -0.8 59,614 + GFF6268 0.18 +0.0 59,614 + GFF6268 0.18 +0.4 59,614 + GFF6268 0.18 -3.4 59,615 - GFF6268 0.18 +1.1 59,615 - GFF6268 0.18 -0.3 59,615 - GFF6268 0.18 -0.3 59,615 - GFF6268 0.18 -2.0 59,615 - GFF6268 0.18 -0.8 59,733 + GFF6268 0.30 +0.7 59,734 - GFF6268 0.30 -3.5 60,210 + GFF6268 0.77 +0.2 60,381 + -1.7 60,381 + +0.3 60,381 + +1.8 60,381 + +0.1 60,381 + -1.0 60,381 + +0.8 60,381 + -0.6 60,381 + -1.9 60,381 + -0.6 60,382 - +1.3 60,382 - -1.8 60,382 - +1.5 60,382 - -2.3 60,382 - +0.1 60,382 - -4.0 60,382 - +1.8 60,382 - +1.1 60,382 - -3.8 60,796 + GFF6269 0.19 +0.7 60,796 + GFF6269 0.19 -0.7 60,865 + GFF6269 0.23 +0.7 60,865 + GFF6269 0.23 +0.9 60,865 + GFF6269 0.23 -0.9 60,865 + GFF6269 0.23 -0.3 60,865 + GFF6269 0.23 -1.7 61,021 + GFF6269 0.32 +1.7 61,021 + GFF6269 0.32 -3.7 61,021 + GFF6269 0.32 -0.4 61,022 - GFF6269 0.32 -1.6 61,022 - GFF6269 0.32 +0.0 61,171 + GFF6269 0.41 +0.7 61,171 + GFF6269 0.41 +0.7 61,171 + GFF6269 0.41 -2.1 61,172 - GFF6269 0.41 -2.3 61,172 - GFF6269 0.41 -0.6 61,172 - GFF6269 0.41 -0.2 61,172 - GFF6269 0.41 -0.3 61,172 - GFF6269 0.41 +0.2 61,174 + GFF6269 0.41 +0.1 61,174 + GFF6269 0.41 -0.9 61,175 - GFF6269 0.41 -0.8 61,175 - GFF6269 0.41 +0.3 61,175 - GFF6269 0.41 -1.8 61,175 - GFF6269 0.41 +0.0 61,333 + GFF6269 0.50 +0.4 61,334 - GFF6269 0.50 +0.1
Or see this region's nucleotide sequence