Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6265 and GFF6266 are separated by 21 nucleotides GFF6266 and GFF6267 are separated by 64 nucleotides GFF6267 and GFF6268 are separated by 98 nucleotides
GFF6265 - Thiamine-monophosphate kinase (EC 2.7.4.16), at 56,709 to 57,665
GFF6265
GFF6266 - putative lipoprotein, at 57,687 to 58,367
GFF6266
GFF6267 - Transcriptional regulator, LysR family, at 58,432 to 59,328
GFF6267
GFF6268 - BUG/TctC family periplasmic protein, at 59,427 to 60,446
GFF6268
Position (kb) 58
59
60 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 57.946 kb on + strand, within GFF6266 at 57.946 kb on + strand, within GFF6266 at 57.946 kb on + strand, within GFF6266 at 57.946 kb on + strand, within GFF6266 at 57.947 kb on - strand, within GFF6266 at 57.958 kb on + strand, within GFF6266 at 57.959 kb on - strand, within GFF6266 at 58.192 kb on + strand, within GFF6266 at 58.192 kb on + strand, within GFF6266 at 58.192 kb on + strand, within GFF6266 at 58.193 kb on - strand, within GFF6266 at 58.193 kb on - strand, within GFF6266 at 58.193 kb on - strand, within GFF6266 at 58.193 kb on - strand, within GFF6266 at 58.204 kb on + strand, within GFF6266 at 58.205 kb on - strand, within GFF6266 at 58.512 kb on + strand at 58.512 kb on + strand at 58.512 kb on + strand at 58.513 kb on - strand at 58.513 kb on - strand at 58.718 kb on + strand, within GFF6267 at 59.273 kb on + strand at 59.273 kb on + strand at 59.273 kb on + strand at 59.308 kb on - strand at 59.341 kb on + strand at 59.341 kb on + strand at 59.341 kb on + strand at 59.342 kb on - strand at 59.366 kb on - strand at 59.366 kb on - strand at 59.366 kb on - strand at 59.614 kb on + strand, within GFF6268 at 59.614 kb on + strand, within GFF6268 at 59.614 kb on + strand, within GFF6268 at 59.615 kb on - strand, within GFF6268 at 59.615 kb on - strand, within GFF6268 at 59.615 kb on - strand, within GFF6268 at 59.615 kb on - strand, within GFF6268 at 59.615 kb on - strand, within GFF6268 at 59.733 kb on + strand, within GFF6268 at 59.734 kb on - strand, within GFF6268 at 60.210 kb on + strand, within GFF6268
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 57,946 + GFF6266 0.38 +1.5 57,946 + GFF6266 0.38 +0.1 57,946 + GFF6266 0.38 +0.2 57,946 + GFF6266 0.38 -1.9 57,947 - GFF6266 0.38 +0.7 57,958 + GFF6266 0.40 +2.2 57,959 - GFF6266 0.40 +0.7 58,192 + GFF6266 0.74 -0.3 58,192 + GFF6266 0.74 +0.7 58,192 + GFF6266 0.74 +1.0 58,193 - GFF6266 0.74 -0.7 58,193 - GFF6266 0.74 -2.2 58,193 - GFF6266 0.74 -0.2 58,193 - GFF6266 0.74 -2.5 58,204 + GFF6266 0.76 -0.1 58,205 - GFF6266 0.76 +1.2 58,512 + -0.9 58,512 + +1.9 58,512 + -0.8 58,513 - +1.4 58,513 - +2.6 58,718 + GFF6267 0.32 -1.3 59,273 + -1.8 59,273 + -2.6 59,273 + +0.2 59,308 - -1.7 59,341 + +0.1 59,341 + +2.2 59,341 + +0.2 59,342 - +0.2 59,366 - -1.4 59,366 - +1.3 59,366 - -0.8 59,614 + GFF6268 0.18 +0.0 59,614 + GFF6268 0.18 +0.4 59,614 + GFF6268 0.18 -3.4 59,615 - GFF6268 0.18 +1.1 59,615 - GFF6268 0.18 -0.3 59,615 - GFF6268 0.18 -0.3 59,615 - GFF6268 0.18 -2.0 59,615 - GFF6268 0.18 -0.8 59,733 + GFF6268 0.30 +0.7 59,734 - GFF6268 0.30 -3.5 60,210 + GFF6268 0.77 +0.2
Or see this region's nucleotide sequence