Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6263 and GFF6264 overlap by 4 nucleotides GFF6264 and GFF6265 overlap by 19 nucleotides GFF6265 and GFF6266 are separated by 21 nucleotides GFF6266 and GFF6267 are separated by 64 nucleotides
GFF6263 - Uncharacterized protein Atu0170, clustered with phosphonate utilization, at 55,403 to 56,137
GFF6263
GFF6264 - Ribose 1,5-bisphosphate phosphokinase PhnN (EC 2.7.4.23), at 56,134 to 56,727
GFF6264
GFF6265 - Thiamine-monophosphate kinase (EC 2.7.4.16), at 56,709 to 57,665
GFF6265
GFF6266 - putative lipoprotein, at 57,687 to 58,367
GFF6266
GFF6267 - Transcriptional regulator, LysR family, at 58,432 to 59,328
GFF6267
Position (kb) 56
57
58 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 55.917 kb on - strand, within GFF6263 at 56.152 kb on + strand at 56.152 kb on + strand at 56.153 kb on - strand at 56.153 kb on - strand at 56.153 kb on - strand at 56.368 kb on + strand, within GFF6264 at 56.369 kb on - strand, within GFF6264 at 56.440 kb on + strand, within GFF6264 at 56.440 kb on + strand, within GFF6264 at 56.441 kb on - strand, within GFF6264 at 56.592 kb on - strand, within GFF6264 at 56.697 kb on + strand at 56.697 kb on + strand at 56.698 kb on - strand at 56.698 kb on - strand at 57.946 kb on + strand, within GFF6266 at 57.946 kb on + strand, within GFF6266 at 57.946 kb on + strand, within GFF6266 at 57.946 kb on + strand, within GFF6266 at 57.947 kb on - strand, within GFF6266 at 57.958 kb on + strand, within GFF6266 at 57.959 kb on - strand, within GFF6266 at 58.192 kb on + strand, within GFF6266 at 58.192 kb on + strand, within GFF6266 at 58.192 kb on + strand, within GFF6266 at 58.193 kb on - strand, within GFF6266 at 58.193 kb on - strand, within GFF6266 at 58.193 kb on - strand, within GFF6266 at 58.193 kb on - strand, within GFF6266 at 58.204 kb on + strand, within GFF6266 at 58.205 kb on - strand, within GFF6266 at 58.512 kb on + strand at 58.512 kb on + strand at 58.512 kb on + strand at 58.513 kb on - strand at 58.513 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 55,917 - GFF6263 0.70 +0.2 56,152 + +0.1 56,152 + -0.3 56,153 - -0.3 56,153 - -1.5 56,153 - -1.2 56,368 + GFF6264 0.39 -2.2 56,369 - GFF6264 0.40 -0.3 56,440 + GFF6264 0.52 -3.0 56,440 + GFF6264 0.52 -1.2 56,441 - GFF6264 0.52 -2.2 56,592 - GFF6264 0.77 -1.3 56,697 + -1.9 56,697 + +1.0 56,698 - -0.2 56,698 - +0.0 57,946 + GFF6266 0.38 +1.5 57,946 + GFF6266 0.38 +0.1 57,946 + GFF6266 0.38 +0.2 57,946 + GFF6266 0.38 -1.9 57,947 - GFF6266 0.38 +0.7 57,958 + GFF6266 0.40 +2.2 57,959 - GFF6266 0.40 +0.7 58,192 + GFF6266 0.74 -0.3 58,192 + GFF6266 0.74 +0.7 58,192 + GFF6266 0.74 +1.0 58,193 - GFF6266 0.74 -0.7 58,193 - GFF6266 0.74 -2.2 58,193 - GFF6266 0.74 -0.2 58,193 - GFF6266 0.74 -2.5 58,204 + GFF6266 0.76 -0.1 58,205 - GFF6266 0.76 +1.2 58,512 + -0.9 58,512 + +1.9 58,512 + -0.8 58,513 - +1.4 58,513 - +2.6
Or see this region's nucleotide sequence