Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6192 and GFF6193 are separated by 4 nucleotides GFF6193 and GFF6194 are separated by 46 nucleotides GFF6194 and GFF6195 overlap by 4 nucleotides
GFF6192 - Amidase family protein Atu4441, at 98,159 to 99,562
GFF6192
GFF6193 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 99,567 to 101,060
GFF6193
GFF6194 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 101,107 to 101,922
GFF6194
GFF6195 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 101,919 to 102,926
GFF6195
Position (kb) 99
100
101
102 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 98.943 kb on + strand, within GFF6192 at 98.944 kb on - strand, within GFF6192 at 98.944 kb on - strand, within GFF6192 at 98.944 kb on - strand, within GFF6192 at 98.989 kb on - strand, within GFF6192 at 98.989 kb on - strand, within GFF6192 at 98.989 kb on - strand, within GFF6192 at 99.246 kb on + strand, within GFF6192 at 99.246 kb on + strand, within GFF6192 at 99.267 kb on + strand, within GFF6192 at 99.268 kb on - strand, within GFF6192 at 99.268 kb on - strand, within GFF6192 at 99.511 kb on - strand at 99.543 kb on + strand at 99.802 kb on + strand, within GFF6193 at 99.803 kb on - strand, within GFF6193 at 99.806 kb on - strand, within GFF6193 at 99.820 kb on + strand, within GFF6193 at 99.820 kb on + strand, within GFF6193 at 99.988 kb on + strand, within GFF6193 at 99.988 kb on + strand, within GFF6193 at 99.989 kb on - strand, within GFF6193 at 99.989 kb on - strand, within GFF6193 at 99.989 kb on - strand, within GFF6193 at 99.989 kb on - strand, within GFF6193 at 100.773 kb on + strand, within GFF6193 at 100.773 kb on + strand, within GFF6193 at 100.773 kb on + strand, within GFF6193 at 100.773 kb on + strand, within GFF6193 at 100.774 kb on - strand, within GFF6193 at 100.882 kb on + strand, within GFF6193 at 100.883 kb on - strand, within GFF6193 at 100.883 kb on - strand, within GFF6193 at 100.883 kb on - strand, within GFF6193 at 100.883 kb on - strand, within GFF6193 at 100.883 kb on - strand, within GFF6193 at 101.066 kb on - strand at 101.153 kb on + strand at 101.153 kb on + strand at 101.154 kb on - strand at 101.154 kb on - strand at 101.280 kb on - strand, within GFF6194 at 101.280 kb on - strand, within GFF6194 at 101.280 kb on - strand, within GFF6194 at 101.280 kb on - strand, within GFF6194 at 101.598 kb on - strand, within GFF6194 at 101.861 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 98,943 + GFF6192 0.56 -1.8 98,944 - GFF6192 0.56 -0.7 98,944 - GFF6192 0.56 -1.2 98,944 - GFF6192 0.56 +0.2 98,989 - GFF6192 0.59 -3.1 98,989 - GFF6192 0.59 +0.1 98,989 - GFF6192 0.59 -2.3 99,246 + GFF6192 0.77 -3.4 99,246 + GFF6192 0.77 -2.5 99,267 + GFF6192 0.79 -0.3 99,268 - GFF6192 0.79 +1.6 99,268 - GFF6192 0.79 -2.7 99,511 - -3.4 99,543 + -2.0 99,802 + GFF6193 0.16 -1.0 99,803 - GFF6193 0.16 -1.4 99,806 - GFF6193 0.16 +0.7 99,820 + GFF6193 0.17 -1.7 99,820 + GFF6193 0.17 -4.2 99,988 + GFF6193 0.28 -0.0 99,988 + GFF6193 0.28 -1.0 99,989 - GFF6193 0.28 -0.5 99,989 - GFF6193 0.28 +0.3 99,989 - GFF6193 0.28 -3.7 99,989 - GFF6193 0.28 -1.3 100,773 + GFF6193 0.81 -0.5 100,773 + GFF6193 0.81 -2.0 100,773 + GFF6193 0.81 -1.3 100,773 + GFF6193 0.81 -1.0 100,774 - GFF6193 0.81 -0.4 100,882 + GFF6193 0.88 +0.4 100,883 - GFF6193 0.88 -2.2 100,883 - GFF6193 0.88 -2.0 100,883 - GFF6193 0.88 -2.7 100,883 - GFF6193 0.88 -1.3 100,883 - GFF6193 0.88 -1.1 101,066 - -1.3 101,153 + +0.9 101,153 + +0.5 101,154 - -2.1 101,154 - -1.3 101,280 - GFF6194 0.21 -3.9 101,280 - GFF6194 0.21 -1.6 101,280 - GFF6194 0.21 -0.3 101,280 - GFF6194 0.21 -2.0 101,598 - GFF6194 0.60 -2.7 101,861 + -0.6
Or see this region's nucleotide sequence