Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6097 and GFF6098 are separated by 47 nucleotides
GFF6097 - 1,2-phenylacetyl-CoA epoxidase, subunit E (EC 1.14.13.149), at 157,861 to 158,946
GFF6097
GFF6098 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 158,994 to 160,139
GFF6098
Position (kb) 158
159
160
161 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 158.303 kb on - strand, within GFF6097 at 158.365 kb on + strand, within GFF6097 at 158.503 kb on + strand, within GFF6097 at 158.503 kb on + strand, within GFF6097 at 158.503 kb on + strand, within GFF6097 at 158.503 kb on + strand, within GFF6097 at 158.504 kb on - strand, within GFF6097 at 158.504 kb on - strand, within GFF6097 at 158.504 kb on - strand, within GFF6097 at 158.504 kb on - strand, within GFF6097 at 158.504 kb on - strand, within GFF6097 at 158.885 kb on + strand at 158.886 kb on - strand at 158.886 kb on - strand at 158.886 kb on - strand at 158.947 kb on + strand at 158.948 kb on - strand at 158.951 kb on + strand at 158.951 kb on + strand at 158.952 kb on - strand at 159.171 kb on + strand, within GFF6098 at 159.171 kb on + strand, within GFF6098 at 159.171 kb on + strand, within GFF6098 at 159.171 kb on + strand, within GFF6098 at 159.171 kb on + strand, within GFF6098 at 159.171 kb on + strand, within GFF6098 at 159.171 kb on + strand, within GFF6098 at 159.171 kb on + strand, within GFF6098 at 159.171 kb on + strand, within GFF6098 at 159.171 kb on + strand, within GFF6098 at 159.172 kb on - strand, within GFF6098 at 159.172 kb on - strand, within GFF6098 at 159.172 kb on - strand, within GFF6098 at 159.172 kb on - strand, within GFF6098 at 159.489 kb on + strand, within GFF6098 at 159.490 kb on - strand, within GFF6098 at 159.564 kb on + strand, within GFF6098 at 159.565 kb on - strand, within GFF6098 at 159.708 kb on + strand, within GFF6098 at 159.708 kb on + strand, within GFF6098 at 159.708 kb on + strand, within GFF6098 at 159.709 kb on - strand, within GFF6098 at 159.709 kb on - strand, within GFF6098 at 159.709 kb on - strand, within GFF6098 at 159.709 kb on - strand, within GFF6098 at 159.849 kb on + strand, within GFF6098 at 159.849 kb on + strand, within GFF6098 at 159.849 kb on + strand, within GFF6098 at 159.849 kb on + strand, within GFF6098 at 159.850 kb on - strand, within GFF6098 at 159.861 kb on + strand, within GFF6098 at 159.861 kb on + strand, within GFF6098 at 159.861 kb on + strand, within GFF6098 at 160.128 kb on + strand at 160.129 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 158,303 - GFF6097 0.41 +1.3 158,365 + GFF6097 0.46 +0.9 158,503 + GFF6097 0.59 +0.6 158,503 + GFF6097 0.59 -1.4 158,503 + GFF6097 0.59 +3.9 158,503 + GFF6097 0.59 -1.3 158,504 - GFF6097 0.59 -1.8 158,504 - GFF6097 0.59 -1.3 158,504 - GFF6097 0.59 +0.3 158,504 - GFF6097 0.59 -2.0 158,504 - GFF6097 0.59 -0.2 158,885 + +2.2 158,886 - +0.4 158,886 - +0.5 158,886 - +1.9 158,947 + +0.8 158,948 - +0.6 158,951 + -0.9 158,951 + -1.2 158,952 - -2.8 159,171 + GFF6098 0.15 -1.5 159,171 + GFF6098 0.15 +0.2 159,171 + GFF6098 0.15 -2.0 159,171 + GFF6098 0.15 -0.4 159,171 + GFF6098 0.15 +0.9 159,171 + GFF6098 0.15 +0.1 159,171 + GFF6098 0.15 -0.7 159,171 + GFF6098 0.15 +0.9 159,171 + GFF6098 0.15 -0.7 159,171 + GFF6098 0.15 +1.2 159,172 - GFF6098 0.16 -3.7 159,172 - GFF6098 0.16 -2.2 159,172 - GFF6098 0.16 -2.3 159,172 - GFF6098 0.16 +0.2 159,489 + GFF6098 0.43 -0.1 159,490 - GFF6098 0.43 -0.3 159,564 + GFF6098 0.50 +1.0 159,565 - GFF6098 0.50 -1.5 159,708 + GFF6098 0.62 -0.1 159,708 + GFF6098 0.62 -1.4 159,708 + GFF6098 0.62 -0.4 159,709 - GFF6098 0.62 +2.8 159,709 - GFF6098 0.62 +1.0 159,709 - GFF6098 0.62 +0.2 159,709 - GFF6098 0.62 -2.7 159,849 + GFF6098 0.75 -0.7 159,849 + GFF6098 0.75 +1.1 159,849 + GFF6098 0.75 +1.2 159,849 + GFF6098 0.75 +0.2 159,850 - GFF6098 0.75 +2.6 159,861 + GFF6098 0.76 -0.9 159,861 + GFF6098 0.76 -2.5 159,861 + GFF6098 0.76 -1.7 160,128 + +0.1 160,129 - -0.6
Or see this region's nucleotide sequence