Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5856 and GFF5857 are separated by 109 nucleotides GFF5857 and GFF5858 overlap by 4 nucleotides GFF5858 and GFF5859 are separated by 119 nucleotides
GFF5856 - Outer membrane receptor proteins, likely involved in siderophore uptake, at 55,882 to 58,413
GFF5856
GFF5857 - Fe2+-dicitrate sensor, membrane component, at 58,523 to 59,509
GFF5857
GFF5858 - heme uptake regulator, at 59,506 to 60,033
GFF5858
GFF5859 - KEGG: nickel transport system substrate-binding protein, at 60,153 to 60,905
GFF5859
Position (kb) 58
59
60 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 57.635 kb on + strand, within GFF5856 at 57.635 kb on + strand, within GFF5856 at 57.635 kb on + strand, within GFF5856 at 57.635 kb on + strand, within GFF5856 at 57.635 kb on + strand, within GFF5856 at 57.635 kb on + strand, within GFF5856 at 57.635 kb on + strand, within GFF5856 at 57.635 kb on + strand, within GFF5856 at 57.635 kb on + strand, within GFF5856 at 57.635 kb on + strand, within GFF5856 at 57.635 kb on + strand, within GFF5856 at 57.635 kb on + strand, within GFF5856 at 57.636 kb on - strand, within GFF5856 at 57.636 kb on - strand, within GFF5856 at 57.636 kb on - strand, within GFF5856 at 57.636 kb on - strand, within GFF5856 at 57.636 kb on - strand, within GFF5856 at 57.636 kb on - strand, within GFF5856 at 57.636 kb on - strand, within GFF5856 at 57.636 kb on - strand, within GFF5856 at 57.636 kb on - strand, within GFF5856 at 57.636 kb on - strand, within GFF5856 at 58.247 kb on + strand at 58.247 kb on + strand at 58.247 kb on + strand at 58.247 kb on + strand at 58.247 kb on + strand at 58.247 kb on + strand at 58.247 kb on + strand at 58.247 kb on + strand at 58.247 kb on + strand at 58.247 kb on + strand at 58.247 kb on + strand at 58.247 kb on + strand at 58.247 kb on + strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.548 kb on + strand at 58.548 kb on + strand at 58.549 kb on - strand at 58.549 kb on - strand at 58.549 kb on - strand at 58.734 kb on + strand, within GFF5857 at 58.734 kb on + strand, within GFF5857 at 58.734 kb on - strand, within GFF5857 at 58.735 kb on - strand, within GFF5857 at 58.735 kb on - strand, within GFF5857 at 58.735 kb on - strand, within GFF5857 at 58.921 kb on + strand, within GFF5857 at 58.921 kb on + strand, within GFF5857 at 58.921 kb on + strand, within GFF5857 at 58.922 kb on - strand, within GFF5857 at 58.922 kb on - strand, within GFF5857 at 58.922 kb on - strand, within GFF5857 at 58.922 kb on - strand, within GFF5857 at 58.922 kb on - strand, within GFF5857 at 58.922 kb on - strand, within GFF5857 at 58.922 kb on - strand, within GFF5857 at 58.922 kb on - strand, within GFF5857 at 58.922 kb on - strand, within GFF5857 at 59.175 kb on + strand, within GFF5857 at 59.175 kb on + strand, within GFF5857 at 59.175 kb on + strand, within GFF5857 at 59.176 kb on - strand, within GFF5857 at 59.369 kb on + strand, within GFF5857 at 59.369 kb on + strand, within GFF5857 at 59.369 kb on + strand, within GFF5857 at 59.561 kb on + strand, within GFF5858 at 59.561 kb on + strand, within GFF5858 at 59.561 kb on + strand, within GFF5858 at 59.561 kb on + strand, within GFF5858 at 59.561 kb on + strand, within GFF5858 at 59.561 kb on + strand, within GFF5858 at 59.561 kb on + strand, within GFF5858 at 59.561 kb on + strand, within GFF5858 at 59.561 kb on + strand, within GFF5858 at 59.561 kb on + strand, within GFF5858 at 59.562 kb on - strand, within GFF5858 at 59.562 kb on - strand, within GFF5858 at 59.562 kb on - strand, within GFF5858 at 59.562 kb on - strand, within GFF5858 at 59.562 kb on - strand, within GFF5858 at 59.562 kb on - strand, within GFF5858 at 59.562 kb on - strand, within GFF5858 at 59.612 kb on + strand, within GFF5858 at 59.612 kb on + strand, within GFF5858 at 59.613 kb on - strand, within GFF5858 at 59.613 kb on - strand, within GFF5858 at 59.771 kb on + strand, within GFF5858 at 59.771 kb on + strand, within GFF5858 at 59.771 kb on + strand, within GFF5858 at 59.772 kb on - strand, within GFF5858 at 59.772 kb on - strand, within GFF5858 at 59.772 kb on - strand, within GFF5858 at 59.837 kb on + strand, within GFF5858 at 59.838 kb on - strand, within GFF5858 at 59.929 kb on + strand, within GFF5858 at 59.987 kb on + strand at 59.987 kb on + strand at 59.987 kb on + strand at 59.987 kb on + strand at 59.987 kb on + strand at 59.987 kb on + strand at 59.987 kb on + strand at 59.987 kb on + strand at 59.987 kb on + strand at 59.987 kb on + strand at 59.987 kb on + strand at 59.987 kb on + strand at 59.988 kb on - strand at 59.988 kb on - strand at 59.988 kb on - strand at 59.988 kb on - strand at 59.988 kb on - strand at 59.988 kb on - strand at 59.988 kb on - strand at 59.988 kb on - strand at 60.093 kb on + strand at 60.118 kb on - strand at 60.118 kb on - strand at 60.508 kb on + strand, within GFF5859 at 60.508 kb on + strand, within GFF5859 at 60.508 kb on + strand, within GFF5859 at 60.508 kb on + strand, within GFF5859 at 60.509 kb on - strand, within GFF5859 at 60.509 kb on - strand, within GFF5859 at 60.509 kb on - strand, within GFF5859 at 60.509 kb on - strand, within GFF5859 at 60.509 kb on - strand, within GFF5859 at 60.509 kb on - strand, within GFF5859
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 57,635 + GFF5856 0.69 +0.0 57,635 + GFF5856 0.69 -0.0 57,635 + GFF5856 0.69 +1.2 57,635 + GFF5856 0.69 +0.6 57,635 + GFF5856 0.69 +1.0 57,635 + GFF5856 0.69 -0.1 57,635 + GFF5856 0.69 -0.2 57,635 + GFF5856 0.69 -2.0 57,635 + GFF5856 0.69 -1.3 57,635 + GFF5856 0.69 +0.6 57,635 + GFF5856 0.69 -1.9 57,635 + GFF5856 0.69 +1.2 57,636 - GFF5856 0.69 -1.1 57,636 - GFF5856 0.69 +0.1 57,636 - GFF5856 0.69 -1.5 57,636 - GFF5856 0.69 +1.0 57,636 - GFF5856 0.69 +0.4 57,636 - GFF5856 0.69 +0.4 57,636 - GFF5856 0.69 -0.0 57,636 - GFF5856 0.69 -2.0 57,636 - GFF5856 0.69 -1.0 57,636 - GFF5856 0.69 -3.2 58,247 + +2.2 58,247 + -0.2 58,247 + +0.9 58,247 + -0.4 58,247 + -0.2 58,247 + -2.0 58,247 + -1.3 58,247 + -1.3 58,247 + +1.1 58,247 + +0.6 58,247 + -2.3 58,247 + -1.0 58,247 + -1.9 58,248 - -0.3 58,248 - -0.0 58,248 - -0.6 58,248 - -3.5 58,248 - -0.1 58,248 - -1.3 58,248 - -1.0 58,248 - +1.6 58,248 - -4.1 58,248 - +0.2 58,248 - -0.4 58,248 - -1.3 58,248 - +0.9 58,248 - +1.8 58,248 - +3.1 58,248 - -2.8 58,248 - -2.3 58,248 - -0.0 58,248 - +1.2 58,548 + +0.7 58,548 + -1.6 58,549 - -1.7 58,549 - -1.1 58,549 - -0.2 58,734 + GFF5857 0.21 +0.2 58,734 + GFF5857 0.21 +0.3 58,734 - GFF5857 0.21 +1.0 58,735 - GFF5857 0.21 -0.7 58,735 - GFF5857 0.21 +0.1 58,735 - GFF5857 0.21 +0.2 58,921 + GFF5857 0.40 +0.7 58,921 + GFF5857 0.40 -1.6 58,921 + GFF5857 0.40 -2.0 58,922 - GFF5857 0.40 -0.4 58,922 - GFF5857 0.40 -1.4 58,922 - GFF5857 0.40 +1.4 58,922 - GFF5857 0.40 -1.5 58,922 - GFF5857 0.40 -1.5 58,922 - GFF5857 0.40 +0.2 58,922 - GFF5857 0.40 -2.0 58,922 - GFF5857 0.40 +0.6 58,922 - GFF5857 0.40 -1.5 59,175 + GFF5857 0.66 -2.8 59,175 + GFF5857 0.66 -0.4 59,175 + GFF5857 0.66 +0.4 59,176 - GFF5857 0.66 -0.6 59,369 + GFF5857 0.86 -2.3 59,369 + GFF5857 0.86 -0.1 59,369 + GFF5857 0.86 -2.1 59,561 + GFF5858 0.10 +1.2 59,561 + GFF5858 0.10 -0.6 59,561 + GFF5858 0.10 -0.4 59,561 + GFF5858 0.10 -2.9 59,561 + GFF5858 0.10 +0.8 59,561 + GFF5858 0.10 -0.1 59,561 + GFF5858 0.10 -0.9 59,561 + GFF5858 0.10 -0.3 59,561 + GFF5858 0.10 -1.2 59,561 + GFF5858 0.10 -1.1 59,562 - GFF5858 0.11 -2.7 59,562 - GFF5858 0.11 -2.6 59,562 - GFF5858 0.11 +0.2 59,562 - GFF5858 0.11 +1.6 59,562 - GFF5858 0.11 +0.9 59,562 - GFF5858 0.11 +0.2 59,562 - GFF5858 0.11 -0.8 59,612 + GFF5858 0.20 -2.1 59,612 + GFF5858 0.20 +0.7 59,613 - GFF5858 0.20 +1.5 59,613 - GFF5858 0.20 -0.7 59,771 + GFF5858 0.50 -0.2 59,771 + GFF5858 0.50 -0.6 59,771 + GFF5858 0.50 +0.1 59,772 - GFF5858 0.50 -1.0 59,772 - GFF5858 0.50 +1.1 59,772 - GFF5858 0.50 +1.3 59,837 + GFF5858 0.63 -2.5 59,838 - GFF5858 0.63 +0.2 59,929 + GFF5858 0.80 +0.1 59,987 + +0.2 59,987 + -1.0 59,987 + +1.0 59,987 + +1.5 59,987 + +0.2 59,987 + +0.4 59,987 + -1.6 59,987 + -1.4 59,987 + +3.0 59,987 + +1.5 59,987 + -1.3 59,987 + +0.4 59,988 - -0.1 59,988 - -2.7 59,988 - +0.4 59,988 - -0.4 59,988 - -3.1 59,988 - +0.6 59,988 - -2.0 59,988 - -2.6 60,093 + -1.0 60,118 - +0.2 60,118 - -0.3 60,508 + GFF5859 0.47 +1.2 60,508 + GFF5859 0.47 -1.1 60,508 + GFF5859 0.47 -1.8 60,508 + GFF5859 0.47 -2.4 60,509 - GFF5859 0.47 +2.2 60,509 - GFF5859 0.47 -1.4 60,509 - GFF5859 0.47 +2.0 60,509 - GFF5859 0.47 +1.5 60,509 - GFF5859 0.47 -1.0 60,509 - GFF5859 0.47 -1.7
Or see this region's nucleotide sequence