Strain Fitness in Variovorax sp. SCN45 around GFF5800

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5799 and GFF5800 are separated by 183 nucleotidesGFF5800 and GFF5801 overlap by 4 nucleotides GFF5799 - Urea ABC transporter, substrate-binding protein UrtA, at 173,644 to 174,912 GFF5799 GFF5800 - Urea ABC transporter, permease protein UrtB, at 175,096 to 176,643 GFF5800 GFF5801 - Urea ABC transporter, permease protein UrtC, at 176,640 to 177,857 GFF5801 Position (kb) 175 176 177Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 174.109 kb on + strand, within GFF5799at 174.110 kb on - strand, within GFF5799at 174.166 kb on + strand, within GFF5799at 174.166 kb on + strand, within GFF5799at 174.167 kb on - strand, within GFF5799at 174.167 kb on - strand, within GFF5799at 174.206 kb on - strand, within GFF5799at 174.250 kb on + strand, within GFF5799at 174.250 kb on + strand, within GFF5799at 174.251 kb on - strand, within GFF5799at 174.251 kb on - strand, within GFF5799at 174.251 kb on - strand, within GFF5799at 174.251 kb on - strand, within GFF5799at 174.274 kb on + strand, within GFF5799at 174.367 kb on + strand, within GFF5799at 174.367 kb on + strand, within GFF5799at 174.368 kb on - strand, within GFF5799at 174.368 kb on - strand, within GFF5799at 174.493 kb on + strand, within GFF5799at 174.551 kb on - strand, within GFF5799at 174.859 kb on + strandat 174.860 kb on - strandat 174.860 kb on - strandat 174.860 kb on - strandat 174.861 kb on + strandat 174.862 kb on - strandat 174.910 kb on + strandat 174.910 kb on + strandat 174.910 kb on + strandat 174.911 kb on - strandat 174.911 kb on - strandat 175.262 kb on - strand, within GFF5800at 175.303 kb on + strand, within GFF5800at 175.820 kb on - strand, within GFF5800at 175.820 kb on - strand, within GFF5800at 175.877 kb on - strand, within GFF5800at 175.877 kb on - strand, within GFF5800at 175.885 kb on + strand, within GFF5800at 175.886 kb on - strand, within GFF5800at 175.913 kb on - strand, within GFF5800at 175.913 kb on - strand, within GFF5800at 175.913 kb on - strand, within GFF5800at 175.939 kb on + strand, within GFF5800at 175.939 kb on + strand, within GFF5800at 175.939 kb on + strand, within GFF5800at 175.939 kb on + strand, within GFF5800at 175.940 kb on - strand, within GFF5800at 176.335 kb on + strand, within GFF5800at 176.335 kb on + strand, within GFF5800at 176.336 kb on - strand, within GFF5800at 176.336 kb on - strand, within GFF5800at 176.336 kb on - strand, within GFF5800at 176.425 kb on + strand, within GFF5800at 176.425 kb on + strand, within GFF5800at 176.425 kb on + strand, within GFF5800at 176.425 kb on + strand, within GFF5800at 176.426 kb on - strand, within GFF5800at 176.426 kb on - strand, within GFF5800at 176.488 kb on + strand, within GFF5800at 176.489 kb on - strandat 176.788 kb on - strand, within GFF5801at 176.788 kb on - strand, within GFF5801at 176.820 kb on + strand, within GFF5801at 176.820 kb on + strand, within GFF5801at 176.910 kb on + strand, within GFF5801at 176.926 kb on - strand, within GFF5801at 176.926 kb on - strand, within GFF5801at 176.926 kb on - strand, within GFF5801at 176.926 kb on - strand, within GFF5801at 176.958 kb on + strand, within GFF5801at 176.959 kb on - strand, within GFF5801at 176.959 kb on - strand, within GFF5801at 177.053 kb on - strand, within GFF5801at 177.129 kb on + strand, within GFF5801at 177.130 kb on - strand, within GFF5801at 177.418 kb on - strand, within GFF5801at 177.474 kb on + strand, within GFF5801at 177.474 kb on + strand, within GFF5801

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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174,109 + GFF5799 0.37 -2.1
174,110 - GFF5799 0.37 +2.0
174,166 + GFF5799 0.41 -0.7
174,166 + GFF5799 0.41 -0.2
174,167 - GFF5799 0.41 +1.1
174,167 - GFF5799 0.41 -0.6
174,206 - GFF5799 0.44 -0.2
174,250 + GFF5799 0.48 +0.7
174,250 + GFF5799 0.48 -2.1
174,251 - GFF5799 0.48 -0.5
174,251 - GFF5799 0.48 -3.0
174,251 - GFF5799 0.48 -0.3
174,251 - GFF5799 0.48 +1.1
174,274 + GFF5799 0.50 -0.0
174,367 + GFF5799 0.57 -0.4
174,367 + GFF5799 0.57 -0.4
174,368 - GFF5799 0.57 +0.0
174,368 - GFF5799 0.57 -0.4
174,493 + GFF5799 0.67 +2.3
174,551 - GFF5799 0.71 -0.4
174,859 + -0.1
174,860 - -0.4
174,860 - +0.2
174,860 - -1.0
174,861 + -0.7
174,862 - +1.1
174,910 + +2.0
174,910 + +0.7
174,910 + -0.9
174,911 - +1.2
174,911 - +1.0
175,262 - GFF5800 0.11 +0.4
175,303 + GFF5800 0.13 -1.2
175,820 - GFF5800 0.47 -0.7
175,820 - GFF5800 0.47 -2.5
175,877 - GFF5800 0.50 -0.6
175,877 - GFF5800 0.50 -1.4
175,885 + GFF5800 0.51 +0.1
175,886 - GFF5800 0.51 -0.6
175,913 - GFF5800 0.53 -0.9
175,913 - GFF5800 0.53 -1.4
175,913 - GFF5800 0.53 -1.6
175,939 + GFF5800 0.54 -2.9
175,939 + GFF5800 0.54 -0.0
175,939 + GFF5800 0.54 -0.6
175,939 + GFF5800 0.54 +0.1
175,940 - GFF5800 0.55 -2.2
176,335 + GFF5800 0.80 -2.0
176,335 + GFF5800 0.80 -0.9
176,336 - GFF5800 0.80 -1.2
176,336 - GFF5800 0.80 -0.6
176,336 - GFF5800 0.80 -0.9
176,425 + GFF5800 0.86 +1.0
176,425 + GFF5800 0.86 +0.1
176,425 + GFF5800 0.86 -0.6
176,425 + GFF5800 0.86 +0.6
176,426 - GFF5800 0.86 -0.8
176,426 - GFF5800 0.86 +2.0
176,488 + GFF5800 0.90 -0.6
176,489 - -3.1
176,788 - GFF5801 0.12 +0.6
176,788 - GFF5801 0.12 -0.0
176,820 + GFF5801 0.15 -1.2
176,820 + GFF5801 0.15 +0.4
176,910 + GFF5801 0.22 -2.4
176,926 - GFF5801 0.23 -0.7
176,926 - GFF5801 0.23 -0.4
176,926 - GFF5801 0.23 +2.1
176,926 - GFF5801 0.23 +0.3
176,958 + GFF5801 0.26 -3.7
176,959 - GFF5801 0.26 -0.4
176,959 - GFF5801 0.26 -0.4
177,053 - GFF5801 0.34 -1.8
177,129 + GFF5801 0.40 -2.2
177,130 - GFF5801 0.40 +1.0
177,418 - GFF5801 0.64 -1.0
177,474 + GFF5801 0.68 -0.3
177,474 + GFF5801 0.68 -1.2

Or see this region's nucleotide sequence