Strain Fitness in Variovorax sp. SCN45 around GFF5771

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
142,456	+		GFF5770	0.47	-1.0
142,456	+		GFF5770	0.47	+0.4
142,457	-		GFF5770	0.47	-1.7
142,457	-		GFF5770	0.47	-0.5
142,561	+		GFF5770	0.56	+0.5
142,562	-		GFF5770	0.56	-4.0
142,562	-		GFF5770	0.56	+1.6
142,750	+		GFF5770	0.72	-1.7
142,750	+		GFF5770	0.72	+0.4
142,751	-		GFF5770	0.72	-1.6
142,882	+		GFF5770	0.84	+2.2
142,958	-				-0.0
143,002	-				+1.0
143,038	+				+1.0
143,038	+				-1.2
143,039	-				+1.0
143,039	-				-1.2
143,039	-				-2.3
143,259	+				-1.2
143,259	+				+0.7
143,259	+				-3.7
143,259	+				+1.8
143,259	+				-0.6
143,260	-				+2.8
143,260	-				-0.6
143,260	-				+2.4
143,260	-				+1.2
143,260	-				+0.1
143,260	-				-1.9
143,653	-		GFF5771	0.28	-3.0
143,793	+		GFF5771	0.35	+1.0
143,793	+		GFF5771	0.35	-2.5
143,793	+		GFF5771	0.35	-2.7
143,794	-		GFF5771	0.35	-0.9
144,337	-		GFF5771	0.60	-3.0
144,337	-		GFF5771	0.60	-1.0
144,513	+		GFF5771	0.69	-1.2
144,514	-		GFF5771	0.69	+1.1
144,514	-		GFF5771	0.69	-0.6
144,520	-		GFF5771	0.69	-3.0
144,571	+		GFF5771	0.72	+2.1
144,571	+		GFF5771	0.72	-1.6
145,734	-		GFF5772	0.22	+0.4
145,751	+		GFF5772	0.23	-3.5
145,751	+		GFF5772	0.23	-1.5
145,752	-		GFF5772	0.23	+1.8
145,752	-		GFF5772	0.23	-1.0
145,752	-		GFF5772	0.23	-0.5
145,752	-		GFF5772	0.23	+0.0
145,826	+		GFF5772	0.26	-1.2
145,940	+		GFF5772	0.31	-0.9
145,941	-		GFF5772	0.31	-0.4
145,956	-		GFF5772	0.31	-0.5
145,973	+		GFF5772	0.32	-0.2
145,973	+		GFF5772	0.32	+0.5
145,973	+		GFF5772	0.32	-0.0
145,974	-		GFF5772	0.32	+1.2
145,974	-		GFF5772	0.32	+0.5
145,992	+		GFF5772	0.33	+0.4
145,992	+		GFF5772	0.33	+1.4
146,000	+		GFF5772	0.33	-1.7
146,001	-		GFF5772	0.33	-1.4