Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5637 and GFF5638 are separated by 34 nucleotides GFF5638 and GFF5639 overlap by 4 nucleotides GFF5639 and GFF5640 are separated by 123 nucleotides GFF5640 and GFF5641 overlap by 4 nucleotides GFF5641 and GFF5642 are separated by 7 nucleotides
GFF5637 - Molybdenum ABC transporter ATP-binding protein ModC, at 12,944 to 13,732
GFF5637
GFF5638 - no description, at 13,767 to 14,048
GFF5638
GFF5639 - Death on curing protein, Doc toxin, at 14,045 to 14,359
GFF5639
GFF5640 - Putative formate dehydrogenase oxidoreductase protein, at 14,483 to 16,831
GFF5640
GFF5641 - Formate dehydrogenase chain D (EC 1.2.1.2), at 16,828 to 17,118
GFF5641
GFF5642 - Sulfur carrier protein FdhD, at 17,126 to 18,019
GFF5642
Position (kb) 14
15
16
17 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 13.580 kb on + strand, within GFF5637 at 13.580 kb on + strand, within GFF5637 at 13.580 kb on + strand, within GFF5637 at 13.581 kb on - strand, within GFF5637 at 13.581 kb on - strand, within GFF5637 at 13.581 kb on - strand, within GFF5637 at 13.581 kb on - strand, within GFF5637 at 13.581 kb on - strand, within GFF5637 at 13.741 kb on + strand at 13.749 kb on - strand at 13.756 kb on - strand at 13.965 kb on + strand, within GFF5638 at 14.051 kb on + strand at 14.051 kb on + strand at 14.051 kb on + strand at 14.052 kb on - strand at 14.052 kb on - strand at 14.052 kb on - strand at 14.052 kb on - strand at 14.163 kb on + strand, within GFF5639 at 14.163 kb on + strand, within GFF5639 at 14.163 kb on + strand, within GFF5639 at 14.164 kb on - strand, within GFF5639 at 14.164 kb on - strand, within GFF5639 at 14.164 kb on - strand, within GFF5639 at 14.276 kb on + strand, within GFF5639 at 14.276 kb on + strand, within GFF5639 at 14.276 kb on + strand, within GFF5639 at 14.276 kb on + strand, within GFF5639 at 14.276 kb on + strand, within GFF5639 at 14.276 kb on + strand, within GFF5639 at 14.276 kb on + strand, within GFF5639 at 14.277 kb on - strand, within GFF5639 at 14.277 kb on - strand, within GFF5639 at 14.277 kb on - strand, within GFF5639 at 14.277 kb on - strand, within GFF5639 at 14.295 kb on + strand, within GFF5639 at 14.295 kb on + strand, within GFF5639 at 14.295 kb on + strand, within GFF5639 at 14.296 kb on - strand, within GFF5639 at 14.351 kb on + strand at 14.351 kb on + strand at 14.351 kb on + strand at 14.352 kb on - strand at 14.352 kb on - strand at 14.352 kb on - strand at 14.434 kb on + strand at 14.434 kb on + strand at 14.435 kb on - strand at 14.507 kb on + strand at 14.507 kb on + strand at 14.508 kb on - strand at 14.508 kb on - strand at 14.508 kb on - strand at 14.828 kb on + strand, within GFF5640 at 14.828 kb on + strand, within GFF5640 at 14.828 kb on + strand, within GFF5640 at 14.828 kb on + strand, within GFF5640 at 14.829 kb on - strand, within GFF5640 at 14.829 kb on - strand, within GFF5640 at 14.829 kb on - strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.849 kb on + strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.850 kb on - strand, within GFF5640 at 14.933 kb on + strand, within GFF5640 at 14.933 kb on + strand, within GFF5640 at 14.933 kb on + strand, within GFF5640 at 14.933 kb on + strand, within GFF5640 at 14.933 kb on + strand, within GFF5640 at 14.933 kb on + strand, within GFF5640 at 14.933 kb on + strand, within GFF5640 at 14.933 kb on + strand, within GFF5640 at 14.933 kb on + strand, within GFF5640 at 14.934 kb on - strand, within GFF5640 at 14.934 kb on - strand, within GFF5640 at 14.934 kb on - strand, within GFF5640 at 14.934 kb on - strand, within GFF5640 at 14.934 kb on - strand, within GFF5640 at 14.934 kb on - strand, within GFF5640 at 14.934 kb on - strand, within GFF5640 at 14.972 kb on + strand, within GFF5640 at 14.972 kb on + strand, within GFF5640 at 14.972 kb on + strand, within GFF5640 at 14.972 kb on + strand, within GFF5640 at 14.973 kb on - strand, within GFF5640 at 14.973 kb on - strand, within GFF5640 at 14.993 kb on + strand, within GFF5640 at 14.993 kb on + strand, within GFF5640 at 15.308 kb on + strand, within GFF5640 at 15.308 kb on + strand, within GFF5640 at 15.309 kb on - strand, within GFF5640 at 15.309 kb on - strand, within GFF5640 at 15.309 kb on - strand, within GFF5640 at 15.309 kb on - strand, within GFF5640 at 15.309 kb on - strand, within GFF5640 at 15.309 kb on - strand, within GFF5640 at 15.548 kb on + strand, within GFF5640 at 15.548 kb on + strand, within GFF5640 at 15.548 kb on + strand, within GFF5640 at 15.548 kb on + strand, within GFF5640 at 15.548 kb on + strand, within GFF5640 at 15.548 kb on + strand, within GFF5640 at 15.548 kb on + strand, within GFF5640 at 15.548 kb on + strand, within GFF5640 at 15.548 kb on + strand, within GFF5640 at 15.549 kb on - strand, within GFF5640 at 15.549 kb on - strand, within GFF5640 at 15.549 kb on - strand, within GFF5640 at 15.905 kb on + strand, within GFF5640 at 15.905 kb on + strand, within GFF5640 at 15.905 kb on + strand, within GFF5640 at 15.905 kb on + strand, within GFF5640 at 15.905 kb on + strand, within GFF5640 at 15.905 kb on + strand, within GFF5640 at 15.905 kb on + strand, within GFF5640 at 15.906 kb on - strand, within GFF5640 at 15.906 kb on - strand, within GFF5640 at 15.906 kb on - strand, within GFF5640 at 15.906 kb on - strand, within GFF5640 at 16.217 kb on + strand, within GFF5640 at 16.217 kb on + strand, within GFF5640 at 16.217 kb on + strand, within GFF5640 at 16.217 kb on + strand, within GFF5640 at 16.217 kb on + strand, within GFF5640 at 16.217 kb on + strand, within GFF5640 at 16.217 kb on + strand, within GFF5640 at 16.217 kb on + strand, within GFF5640 at 16.217 kb on + strand, within GFF5640 at 16.217 kb on + strand, within GFF5640 at 16.218 kb on - strand, within GFF5640 at 16.218 kb on - strand, within GFF5640 at 16.218 kb on - strand, within GFF5640 at 16.218 kb on - strand, within GFF5640 at 16.218 kb on - strand, within GFF5640 at 16.218 kb on - strand, within GFF5640 at 16.218 kb on - strand, within GFF5640 at 16.472 kb on + strand, within GFF5640 at 16.472 kb on + strand, within GFF5640 at 16.472 kb on + strand, within GFF5640 at 16.472 kb on + strand, within GFF5640 at 16.472 kb on + strand, within GFF5640 at 16.472 kb on + strand, within GFF5640 at 16.472 kb on + strand, within GFF5640 at 16.472 kb on + strand, within GFF5640 at 16.472 kb on + strand, within GFF5640 at 16.472 kb on + strand, within GFF5640 at 16.473 kb on - strand, within GFF5640 at 16.473 kb on - strand, within GFF5640 at 16.473 kb on - strand, within GFF5640 at 16.473 kb on - strand, within GFF5640 at 16.473 kb on - strand, within GFF5640 at 16.473 kb on - strand, within GFF5640 at 16.487 kb on + strand, within GFF5640 at 16.487 kb on + strand, within GFF5640 at 16.487 kb on + strand, within GFF5640 at 16.488 kb on - strand, within GFF5640 at 16.488 kb on - strand, within GFF5640 at 16.488 kb on - strand, within GFF5640 at 16.488 kb on - strand, within GFF5640 at 16.655 kb on + strand at 16.655 kb on + strand at 16.655 kb on + strand at 16.655 kb on + strand at 16.656 kb on - strand at 16.656 kb on - strand at 16.656 kb on - strand at 16.685 kb on + strand at 16.685 kb on + strand at 16.685 kb on + strand at 16.685 kb on + strand at 16.685 kb on + strand at 16.685 kb on + strand at 16.685 kb on + strand at 16.685 kb on + strand at 16.685 kb on + strand at 16.685 kb on + strand at 16.686 kb on - strand at 16.686 kb on - strand at 16.686 kb on - strand at 16.688 kb on + strand at 16.688 kb on + strand at 16.688 kb on + strand at 16.689 kb on - strand at 16.689 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 13,580 + GFF5637 0.81 -0.0 13,580 + GFF5637 0.81 -2.3 13,580 + GFF5637 0.81 +0.0 13,581 - GFF5637 0.81 +0.1 13,581 - GFF5637 0.81 +0.6 13,581 - GFF5637 0.81 -1.6 13,581 - GFF5637 0.81 -1.9 13,581 - GFF5637 0.81 -1.5 13,741 + -0.1 13,749 - -2.2 13,756 - -1.0 13,965 + GFF5638 0.70 +1.0 14,051 + +0.5 14,051 + -0.1 14,051 + -1.1 14,052 - -3.1 14,052 - -0.1 14,052 - +1.3 14,052 - -0.9 14,163 + GFF5639 0.37 -2.3 14,163 + GFF5639 0.37 +1.3 14,163 + GFF5639 0.37 +0.9 14,164 - GFF5639 0.38 -0.6 14,164 - GFF5639 0.38 +2.2 14,164 - GFF5639 0.38 -0.4 14,276 + GFF5639 0.73 -1.0 14,276 + GFF5639 0.73 -1.2 14,276 + GFF5639 0.73 +1.7 14,276 + GFF5639 0.73 +0.1 14,276 + GFF5639 0.73 -0.0 14,276 + GFF5639 0.73 -2.9 14,276 + GFF5639 0.73 -3.2 14,277 - GFF5639 0.74 +0.0 14,277 - GFF5639 0.74 -0.4 14,277 - GFF5639 0.74 -3.1 14,277 - GFF5639 0.74 +0.3 14,295 + GFF5639 0.79 -3.5 14,295 + GFF5639 0.79 -1.0 14,295 + GFF5639 0.79 -0.4 14,296 - GFF5639 0.80 +1.3 14,351 + -0.6 14,351 + -2.1 14,351 + +0.4 14,352 - -1.7 14,352 - +0.8 14,352 - -0.0 14,434 + -0.1 14,434 + +0.1 14,435 - -2.9 14,507 + -1.2 14,507 + -2.0 14,508 - -2.1 14,508 - +1.5 14,508 - -1.2 14,828 + GFF5640 0.15 +0.4 14,828 + GFF5640 0.15 -0.6 14,828 + GFF5640 0.15 -2.0 14,828 + GFF5640 0.15 -2.6 14,829 - GFF5640 0.15 -2.0 14,829 - GFF5640 0.15 +0.3 14,829 - GFF5640 0.15 -2.3 14,849 + GFF5640 0.16 -1.2 14,849 + GFF5640 0.16 +1.8 14,849 + GFF5640 0.16 -1.5 14,849 + GFF5640 0.16 +0.6 14,849 + GFF5640 0.16 -1.2 14,849 + GFF5640 0.16 -1.0 14,849 + GFF5640 0.16 +0.3 14,849 + GFF5640 0.16 -2.0 14,849 + GFF5640 0.16 +0.3 14,849 + GFF5640 0.16 -1.7 14,849 + GFF5640 0.16 +1.4 14,849 + GFF5640 0.16 -0.5 14,849 + GFF5640 0.16 +1.0 14,849 + GFF5640 0.16 -1.7 14,849 + GFF5640 0.16 -1.1 14,849 + GFF5640 0.16 -0.5 14,849 + GFF5640 0.16 +3.5 14,849 + GFF5640 0.16 -0.4 14,849 + GFF5640 0.16 -1.9 14,850 - GFF5640 0.16 +2.0 14,850 - GFF5640 0.16 +0.8 14,850 - GFF5640 0.16 -1.4 14,850 - GFF5640 0.16 -0.6 14,850 - GFF5640 0.16 -0.7 14,850 - GFF5640 0.16 -1.0 14,850 - GFF5640 0.16 +2.0 14,850 - GFF5640 0.16 +0.2 14,850 - GFF5640 0.16 -0.2 14,850 - GFF5640 0.16 +2.0 14,850 - GFF5640 0.16 +0.8 14,850 - GFF5640 0.16 -4.5 14,850 - GFF5640 0.16 -1.7 14,933 + GFF5640 0.19 -0.0 14,933 + GFF5640 0.19 +0.3 14,933 + GFF5640 0.19 -0.5 14,933 + GFF5640 0.19 -3.0 14,933 + GFF5640 0.19 +2.0 14,933 + GFF5640 0.19 -2.7 14,933 + GFF5640 0.19 -2.0 14,933 + GFF5640 0.19 +0.2 14,933 + GFF5640 0.19 +0.0 14,934 - GFF5640 0.19 -1.9 14,934 - GFF5640 0.19 +2.3 14,934 - GFF5640 0.19 +0.1 14,934 - GFF5640 0.19 +0.5 14,934 - GFF5640 0.19 -2.6 14,934 - GFF5640 0.19 -1.2 14,934 - GFF5640 0.19 +0.9 14,972 + GFF5640 0.21 +0.9 14,972 + GFF5640 0.21 +0.8 14,972 + GFF5640 0.21 -0.1 14,972 + GFF5640 0.21 -4.5 14,973 - GFF5640 0.21 -2.6 14,973 - GFF5640 0.21 -3.5 14,993 + GFF5640 0.22 -0.7 14,993 + GFF5640 0.22 -1.4 15,308 + GFF5640 0.35 -3.7 15,308 + GFF5640 0.35 -0.3 15,309 - GFF5640 0.35 +0.4 15,309 - GFF5640 0.35 -0.6 15,309 - GFF5640 0.35 +0.4 15,309 - GFF5640 0.35 +0.2 15,309 - GFF5640 0.35 -0.4 15,309 - GFF5640 0.35 -2.0 15,548 + GFF5640 0.45 -1.1 15,548 + GFF5640 0.45 -2.3 15,548 + GFF5640 0.45 -1.0 15,548 + GFF5640 0.45 -0.9 15,548 + GFF5640 0.45 -2.0 15,548 + GFF5640 0.45 +0.2 15,548 + GFF5640 0.45 -1.2 15,548 + GFF5640 0.45 -1.0 15,548 + GFF5640 0.45 -1.7 15,549 - GFF5640 0.45 -0.6 15,549 - GFF5640 0.45 -0.4 15,549 - GFF5640 0.45 +0.8 15,905 + GFF5640 0.61 -1.7 15,905 + GFF5640 0.61 -2.0 15,905 + GFF5640 0.61 -1.2 15,905 + GFF5640 0.61 +2.3 15,905 + GFF5640 0.61 +2.4 15,905 + GFF5640 0.61 -0.3 15,905 + GFF5640 0.61 -0.3 15,906 - GFF5640 0.61 -0.8 15,906 - GFF5640 0.61 +0.2 15,906 - GFF5640 0.61 -0.4 15,906 - GFF5640 0.61 -1.7 16,217 + GFF5640 0.74 -0.3 16,217 + GFF5640 0.74 +0.3 16,217 + GFF5640 0.74 +1.0 16,217 + GFF5640 0.74 -0.4 16,217 + GFF5640 0.74 -3.1 16,217 + GFF5640 0.74 +0.1 16,217 + GFF5640 0.74 -3.1 16,217 + GFF5640 0.74 -1.3 16,217 + GFF5640 0.74 -1.4 16,217 + GFF5640 0.74 -0.8 16,218 - GFF5640 0.74 +3.7 16,218 - GFF5640 0.74 -2.7 16,218 - GFF5640 0.74 +0.5 16,218 - GFF5640 0.74 -1.5 16,218 - GFF5640 0.74 -3.5 16,218 - GFF5640 0.74 -0.9 16,218 - GFF5640 0.74 -0.7 16,472 + GFF5640 0.85 +1.6 16,472 + GFF5640 0.85 -1.2 16,472 + GFF5640 0.85 -1.6 16,472 + GFF5640 0.85 -0.3 16,472 + GFF5640 0.85 -1.2 16,472 + GFF5640 0.85 +0.1 16,472 + GFF5640 0.85 -1.0 16,472 + GFF5640 0.85 -1.0 16,472 + GFF5640 0.85 -0.1 16,472 + GFF5640 0.85 -1.0 16,473 - GFF5640 0.85 +0.2 16,473 - GFF5640 0.85 -1.7 16,473 - GFF5640 0.85 -1.7 16,473 - GFF5640 0.85 -0.9 16,473 - GFF5640 0.85 -2.9 16,473 - GFF5640 0.85 -1.7 16,487 + GFF5640 0.85 +0.5 16,487 + GFF5640 0.85 +1.8 16,487 + GFF5640 0.85 -0.0 16,488 - GFF5640 0.85 -0.5 16,488 - GFF5640 0.85 -3.1 16,488 - GFF5640 0.85 -2.6 16,488 - GFF5640 0.85 +1.8 16,655 + -0.4 16,655 + -3.3 16,655 + -1.2 16,655 + -4.2 16,656 - -3.9 16,656 - -0.4 16,656 - -1.2 16,685 + +1.0 16,685 + -1.1 16,685 + -2.2 16,685 + -2.7 16,685 + -1.3 16,685 + -1.9 16,685 + -2.5 16,685 + -0.3 16,685 + -0.4 16,685 + -2.1 16,686 - +1.3 16,686 - +1.5 16,686 - -1.4 16,688 + -0.4 16,688 + +1.7 16,688 + +0.1 16,689 - +2.1 16,689 - +0.8
Or see this region's nucleotide sequence