Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5619 and GFF5620 are separated by 63 nucleotides GFF5620 and GFF5621 are separated by 5 nucleotides
GFF5619 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 242,153 to 243,484
GFF5619
GFF5620 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 243,548 to 244,612
GFF5620
GFF5621 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 244,618 to 245,547
GFF5621
Position (kb) 243
244
245 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 242.644 kb on - strand, within GFF5619 at 242.644 kb on - strand, within GFF5619 at 242.706 kb on + strand, within GFF5619 at 242.706 kb on + strand, within GFF5619 at 242.706 kb on + strand, within GFF5619 at 242.707 kb on - strand, within GFF5619 at 242.707 kb on - strand, within GFF5619 at 242.940 kb on + strand, within GFF5619 at 242.941 kb on - strand, within GFF5619 at 243.031 kb on - strand, within GFF5619 at 243.309 kb on + strand, within GFF5619 at 243.310 kb on - strand, within GFF5619 at 243.310 kb on - strand, within GFF5619 at 243.366 kb on + strand at 243.366 kb on + strand at 243.933 kb on + strand, within GFF5620 at 243.933 kb on + strand, within GFF5620 at 243.934 kb on - strand, within GFF5620 at 244.068 kb on + strand, within GFF5620 at 244.069 kb on - strand, within GFF5620 at 244.069 kb on - strand, within GFF5620 at 244.218 kb on + strand, within GFF5620 at 244.219 kb on - strand, within GFF5620 at 244.338 kb on + strand, within GFF5620 at 244.339 kb on - strand, within GFF5620 at 244.339 kb on - strand, within GFF5620 at 244.398 kb on + strand, within GFF5620 at 244.473 kb on + strand, within GFF5620 at 244.576 kb on - strand at 244.576 kb on - strand at 244.606 kb on - strand at 244.606 kb on - strand at 244.692 kb on - strand at 244.692 kb on - strand at 245.165 kb on + strand, within GFF5621 at 245.165 kb on + strand, within GFF5621 at 245.165 kb on + strand, within GFF5621 at 245.165 kb on + strand, within GFF5621 at 245.165 kb on + strand, within GFF5621 at 245.165 kb on + strand, within GFF5621 at 245.211 kb on - strand, within GFF5621 at 245.462 kb on + strand at 245.463 kb on - strand at 245.495 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 242,644 - GFF5619 0.37 +1.2 242,644 - GFF5619 0.37 -0.3 242,706 + GFF5619 0.42 -1.9 242,706 + GFF5619 0.42 -1.2 242,706 + GFF5619 0.42 +0.5 242,707 - GFF5619 0.42 -1.1 242,707 - GFF5619 0.42 +0.6 242,940 + GFF5619 0.59 -0.3 242,941 - GFF5619 0.59 -0.0 243,031 - GFF5619 0.66 +1.9 243,309 + GFF5619 0.87 -1.3 243,310 - GFF5619 0.87 -1.9 243,310 - GFF5619 0.87 +2.1 243,366 + -0.3 243,366 + -0.7 243,933 + GFF5620 0.36 -3.7 243,933 + GFF5620 0.36 +0.4 243,934 - GFF5620 0.36 -1.8 244,068 + GFF5620 0.49 +2.2 244,069 - GFF5620 0.49 +0.9 244,069 - GFF5620 0.49 -3.5 244,218 + GFF5620 0.63 -2.9 244,219 - GFF5620 0.63 +0.9 244,338 + GFF5620 0.74 -0.3 244,339 - GFF5620 0.74 +0.5 244,339 - GFF5620 0.74 +1.5 244,398 + GFF5620 0.80 +1.0 244,473 + GFF5620 0.87 +2.0 244,576 - -1.0 244,576 - -1.7 244,606 - +0.3 244,606 - +1.2 244,692 - -0.9 244,692 - -0.0 245,165 + GFF5621 0.59 +1.3 245,165 + GFF5621 0.59 +3.3 245,165 + GFF5621 0.59 -1.5 245,165 + GFF5621 0.59 -0.6 245,165 + GFF5621 0.59 -1.5 245,165 + GFF5621 0.59 -2.5 245,211 - GFF5621 0.64 +0.9 245,462 + -2.9 245,463 - -1.4 245,495 + -2.3
Or see this region's nucleotide sequence