Strain Fitness in Variovorax sp. SCN45 around GFF5599

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5598 and GFF5599 overlap by 4 nucleotidesGFF5599 and GFF5600 overlap by 4 nucleotidesGFF5600 and GFF5601 are separated by 9 nucleotidesGFF5601 and GFF5602 are separated by 132 nucleotides GFF5598 - putative phospholipase D family protein, at 218,379 to 219,659 GFF5598 GFF5599 - hypothetical protein, at 219,656 to 220,087 GFF5599 GFF5600 - no description, at 220,084 to 220,224 GFF5600 GFF5601 - Predicted hydrolase of the alpha/beta-hydrolase fold, at 220,234 to 220,920 GFF5601 GFF5602 - FIG00348944: hypothetical protein, at 221,053 to 221,559 GFF5602 Position (kb) 219 220 221Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 218.664 kb on + strand, within GFF5598at 218.664 kb on + strand, within GFF5598at 218.664 kb on + strand, within GFF5598at 218.664 kb on + strand, within GFF5598at 218.664 kb on + strand, within GFF5598at 218.664 kb on + strand, within GFF5598at 218.664 kb on + strand, within GFF5598at 218.664 kb on + strand, within GFF5598at 218.664 kb on + strand, within GFF5598at 218.664 kb on + strand, within GFF5598at 218.664 kb on + strand, within GFF5598at 218.664 kb on + strand, within GFF5598at 218.664 kb on + strand, within GFF5598at 218.664 kb on + strand, within GFF5598at 218.664 kb on + strand, within GFF5598at 218.665 kb on - strand, within GFF5598at 218.665 kb on - strand, within GFF5598at 218.665 kb on - strand, within GFF5598at 218.665 kb on - strand, within GFF5598at 218.665 kb on - strand, within GFF5598at 218.665 kb on - strand, within GFF5598at 218.665 kb on - strand, within GFF5598at 218.665 kb on - strand, within GFF5598at 218.665 kb on - strand, within GFF5598at 218.665 kb on - strand, within GFF5598at 218.670 kb on + strand, within GFF5598at 218.670 kb on + strand, within GFF5598at 218.670 kb on + strand, within GFF5598at 218.671 kb on - strand, within GFF5598at 218.671 kb on - strand, within GFF5598at 218.847 kb on + strand, within GFF5598at 218.847 kb on + strand, within GFF5598at 218.848 kb on - strand, within GFF5598at 218.988 kb on + strand, within GFF5598at 218.988 kb on + strand, within GFF5598at 218.989 kb on - strand, within GFF5598at 218.989 kb on - strand, within GFF5598at 218.989 kb on - strand, within GFF5598at 219.081 kb on + strand, within GFF5598at 219.171 kb on + strand, within GFF5598at 219.171 kb on + strand, within GFF5598at 219.171 kb on + strand, within GFF5598at 219.171 kb on + strand, within GFF5598at 219.171 kb on + strand, within GFF5598at 219.171 kb on + strand, within GFF5598at 219.171 kb on + strand, within GFF5598at 219.171 kb on + strand, within GFF5598at 219.171 kb on + strand, within GFF5598at 219.172 kb on - strand, within GFF5598at 219.172 kb on - strand, within GFF5598at 219.172 kb on - strand, within GFF5598at 219.172 kb on - strand, within GFF5598at 219.172 kb on - strand, within GFF5598at 219.222 kb on + strand, within GFF5598at 219.222 kb on + strand, within GFF5598at 219.223 kb on - strand, within GFF5598at 219.223 kb on - strand, within GFF5598at 219.223 kb on - strand, within GFF5598at 219.390 kb on + strand, within GFF5598at 219.510 kb on + strand, within GFF5598at 219.510 kb on + strand, within GFF5598at 219.510 kb on + strand, within GFF5598at 219.511 kb on - strand, within GFF5598at 219.511 kb on - strand, within GFF5598at 219.582 kb on + strandat 219.582 kb on + strandat 219.582 kb on + strandat 219.582 kb on + strandat 219.583 kb on - strandat 219.583 kb on - strandat 219.583 kb on - strandat 219.583 kb on - strandat 219.657 kb on + strandat 219.657 kb on + strandat 219.657 kb on + strandat 219.658 kb on - strandat 219.658 kb on - strandat 219.658 kb on - strandat 219.658 kb on - strandat 219.658 kb on - strandat 219.750 kb on + strand, within GFF5599at 219.795 kb on + strand, within GFF5599at 219.795 kb on + strand, within GFF5599at 219.795 kb on + strand, within GFF5599at 219.795 kb on + strand, within GFF5599at 219.796 kb on - strand, within GFF5599at 219.796 kb on - strand, within GFF5599at 219.796 kb on - strand, within GFF5599at 219.796 kb on - strand, within GFF5599at 219.813 kb on + strand, within GFF5599at 219.813 kb on + strand, within GFF5599at 219.813 kb on + strand, within GFF5599at 219.813 kb on + strand, within GFF5599at 219.813 kb on + strand, within GFF5599at 219.813 kb on + strand, within GFF5599at 219.814 kb on - strand, within GFF5599at 219.814 kb on - strand, within GFF5599at 219.814 kb on - strand, within GFF5599at 219.814 kb on - strand, within GFF5599at 219.814 kb on - strand, within GFF5599at 219.858 kb on + strand, within GFF5599at 219.858 kb on + strand, within GFF5599at 219.858 kb on + strand, within GFF5599at 220.159 kb on + strand, within GFF5600at 220.159 kb on + strand, within GFF5600at 220.160 kb on - strand, within GFF5600at 220.160 kb on - strand, within GFF5600at 220.178 kb on - strand, within GFF5600at 220.239 kb on + strandat 220.239 kb on + strandat 220.239 kb on + strandat 220.239 kb on + strandat 220.239 kb on + strandat 220.239 kb on + strandat 220.240 kb on - strandat 220.240 kb on - strandat 220.240 kb on - strandat 220.432 kb on + strand, within GFF5601at 220.432 kb on + strand, within GFF5601at 220.433 kb on - strand, within GFF5601at 220.433 kb on - strand, within GFF5601at 220.433 kb on - strand, within GFF5601at 221.059 kb on + strandat 221.059 kb on + strandat 221.059 kb on + strandat 221.059 kb on + strandat 221.059 kb on + strandat 221.059 kb on + strandat 221.059 kb on + strandat 221.060 kb on - strandat 221.060 kb on - strandat 221.060 kb on - strandat 221.060 kb on - strandat 221.060 kb on - strandat 221.060 kb on - strandat 221.060 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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218,664 + GFF5598 0.22 +0.2
218,664 + GFF5598 0.22 +0.1
218,664 + GFF5598 0.22 -1.6
218,664 + GFF5598 0.22 -0.2
218,664 + GFF5598 0.22 +0.6
218,664 + GFF5598 0.22 +1.0
218,664 + GFF5598 0.22 +1.0
218,664 + GFF5598 0.22 -1.8
218,664 + GFF5598 0.22 -1.2
218,664 + GFF5598 0.22 -1.4
218,664 + GFF5598 0.22 +0.1
218,664 + GFF5598 0.22 +2.0
218,664 + GFF5598 0.22 -0.3
218,664 + GFF5598 0.22 -2.0
218,664 + GFF5598 0.22 -1.3
218,665 - GFF5598 0.22 +3.5
218,665 - GFF5598 0.22 -0.4
218,665 - GFF5598 0.22 -3.6
218,665 - GFF5598 0.22 +1.4
218,665 - GFF5598 0.22 +3.5
218,665 - GFF5598 0.22 -0.1
218,665 - GFF5598 0.22 -1.3
218,665 - GFF5598 0.22 -0.0
218,665 - GFF5598 0.22 +2.2
218,665 - GFF5598 0.22 +2.0
218,670 + GFF5598 0.23 -1.0
218,670 + GFF5598 0.23 +0.4
218,670 + GFF5598 0.23 +0.3
218,671 - GFF5598 0.23 -0.3
218,671 - GFF5598 0.23 +0.8
218,847 + GFF5598 0.37 +1.8
218,847 + GFF5598 0.37 -1.6
218,848 - GFF5598 0.37 +0.7
218,988 + GFF5598 0.48 -0.3
218,988 + GFF5598 0.48 +0.9
218,989 - GFF5598 0.48 +0.2
218,989 - GFF5598 0.48 -0.0
218,989 - GFF5598 0.48 +0.6
219,081 + GFF5598 0.55 -0.5
219,171 + GFF5598 0.62 -1.3
219,171 + GFF5598 0.62 -2.7
219,171 + GFF5598 0.62 +2.0
219,171 + GFF5598 0.62 -1.2
219,171 + GFF5598 0.62 -2.8
219,171 + GFF5598 0.62 +0.3
219,171 + GFF5598 0.62 -2.1
219,171 + GFF5598 0.62 -0.7
219,171 + GFF5598 0.62 +0.7
219,172 - GFF5598 0.62 -1.0
219,172 - GFF5598 0.62 -0.0
219,172 - GFF5598 0.62 -2.1
219,172 - GFF5598 0.62 -1.0
219,172 - GFF5598 0.62 -0.2
219,222 + GFF5598 0.66 +2.8
219,222 + GFF5598 0.66 +0.2
219,223 - GFF5598 0.66 +1.3
219,223 - GFF5598 0.66 +1.7
219,223 - GFF5598 0.66 -1.7
219,390 + GFF5598 0.79 -0.8
219,510 + GFF5598 0.88 +0.1
219,510 + GFF5598 0.88 -0.0
219,510 + GFF5598 0.88 -2.5
219,511 - GFF5598 0.88 +0.7
219,511 - GFF5598 0.88 +1.3
219,582 + +1.7
219,582 + +1.7
219,582 + -0.7
219,582 + +0.5
219,583 - -0.7
219,583 - -0.7
219,583 - -1.4
219,583 - -1.5
219,657 + -1.1
219,657 + -1.9
219,657 + +2.3
219,658 - -0.3
219,658 - -1.3
219,658 - +0.4
219,658 - +1.1
219,658 - -0.8
219,750 + GFF5599 0.22 -1.1
219,795 + GFF5599 0.32 -1.4
219,795 + GFF5599 0.32 -0.5
219,795 + GFF5599 0.32 -0.8
219,795 + GFF5599 0.32 -1.1
219,796 - GFF5599 0.32 -1.0
219,796 - GFF5599 0.32 -3.5
219,796 - GFF5599 0.32 -1.2
219,796 - GFF5599 0.32 -1.9
219,813 + GFF5599 0.36 -0.4
219,813 + GFF5599 0.36 -0.1
219,813 + GFF5599 0.36 +0.7
219,813 + GFF5599 0.36 -0.7
219,813 + GFF5599 0.36 -2.4
219,813 + GFF5599 0.36 +0.3
219,814 - GFF5599 0.37 -3.4
219,814 - GFF5599 0.37 -1.0
219,814 - GFF5599 0.37 +0.1
219,814 - GFF5599 0.37 -0.2
219,814 - GFF5599 0.37 -0.6
219,858 + GFF5599 0.47 -1.7
219,858 + GFF5599 0.47 -0.5
219,858 + GFF5599 0.47 -4.0
220,159 + GFF5600 0.53 +2.3
220,159 + GFF5600 0.53 -4.2
220,160 - GFF5600 0.54 -1.8
220,160 - GFF5600 0.54 +0.9
220,178 - GFF5600 0.67 +0.7
220,239 + -0.2
220,239 + +1.4
220,239 + +0.7
220,239 + -3.6
220,239 + +0.7
220,239 + -1.3
220,240 - -2.5
220,240 - -1.3
220,240 - -2.1
220,432 + GFF5601 0.29 -0.0
220,432 + GFF5601 0.29 +0.2
220,433 - GFF5601 0.29 -0.8
220,433 - GFF5601 0.29 -1.0
220,433 - GFF5601 0.29 -2.0
221,059 + -1.8
221,059 + +1.2
221,059 + -1.9
221,059 + -0.0
221,059 + +2.1
221,059 + -1.0
221,059 + -0.0
221,060 - -1.0
221,060 - +0.8
221,060 - -0.2
221,060 - +1.7
221,060 - +1.2
221,060 - -1.0
221,060 - -1.1

Or see this region's nucleotide sequence