Strain Fitness in Variovorax sp. SCN45 around GFF5545

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
172,145	+				-2.3
172,145	+				+0.7
172,145	+				+1.8
172,145	+				+1.9
172,145	+				-0.7
172,145	+				+0.4
172,145	+				-0.9
172,145	+				-2.3
172,145	+				+0.2
172,145	+				+0.3
172,145	+				-1.1
172,145	+				-0.7
172,145	+				+1.3
172,145	+				-2.1
172,145	+				-2.3
172,145	+				-2.1
172,145	+				-0.9
172,145	+				-0.5
172,145	+				-0.0
172,146	-				+1.2
172,146	-				-1.7
172,146	-				-0.7
172,146	-				+1.3
172,146	-				-3.1
172,146	-				-0.5
172,146	-				-0.1
172,146	-				+0.3
172,146	-				+0.3
172,146	-				-0.1
172,146	-				+1.3
172,146	-				+1.3
172,146	-				+1.4
172,146	-				-0.7
172,146	-				-3.2
172,146	-				+1.2
172,146	-				-2.9
172,146	-				-0.5
172,146	-				-1.0
172,146	-				-1.7
172,146	-				+1.1
172,217	+		GFF5544	0.10	+1.3
172,217	+		GFF5544	0.10	+0.0
172,217	+		GFF5544	0.10	-2.2
172,217	+		GFF5544	0.10	+2.3
172,217	+		GFF5544	0.10	+1.2
172,218	-		GFF5544	0.10	+2.5
172,218	-		GFF5544	0.10	-1.4
172,218	-		GFF5544	0.10	-0.7
172,218	-		GFF5544	0.10	-0.8
172,244	+		GFF5544	0.13	+0.2
172,244	+		GFF5544	0.13	-2.9
172,244	+		GFF5544	0.13	-2.8
172,244	+		GFF5544	0.13	+0.7
172,244	+		GFF5544	0.13	+0.1
172,245	-		GFF5544	0.13	-1.0
172,245	-		GFF5544	0.13	-0.7
172,245	-		GFF5544	0.13	-3.7
172,245	-		GFF5544	0.13	-0.5
172,245	-		GFF5544	0.13	-2.6
172,245	-		GFF5544	0.13	-0.9
172,376	+		GFF5544	0.27	-0.3
172,376	+		GFF5544	0.27	-3.2
172,376	+		GFF5544	0.27	+1.4
172,376	+		GFF5544	0.27	-2.0
172,377	-		GFF5544	0.27	+0.3
172,377	-		GFF5544	0.27	-0.9
172,377	-		GFF5544	0.27	+1.0
172,377	-		GFF5544	0.27	-0.8
172,377	-		GFF5544	0.27	+0.6
172,377	-		GFF5544	0.27	-0.7
172,724	+		GFF5544	0.63	+4.6
172,724	+		GFF5544	0.63	-2.8
172,724	+		GFF5544	0.63	-2.3
172,724	+		GFF5544	0.63	+2.0
172,724	+		GFF5544	0.63	+1.1
172,724	+		GFF5544	0.63	-0.6
172,724	+		GFF5544	0.63	+1.8
172,724	+		GFF5544	0.63	-0.0
172,724	+		GFF5544	0.63	-0.9
172,724	+		GFF5544	0.63	+1.3
172,724	+		GFF5544	0.63	-0.1
172,724	+		GFF5544	0.63	-2.8
172,724	+		GFF5544	0.63	-1.1
172,724	+		GFF5544	0.63	+0.3
172,724	+		GFF5544	0.63	-0.4
172,724	+		GFF5544	0.63	+1.5
172,725	-		GFF5544	0.63	-0.2
172,725	-		GFF5544	0.63	-1.5
172,725	-		GFF5544	0.63	+3.1
172,725	-		GFF5544	0.63	-3.4
172,725	-		GFF5544	0.63	+1.3
172,725	-		GFF5544	0.63	+0.5
172,725	-		GFF5544	0.63	-4.1
172,725	-		GFF5544	0.63	-1.8
172,725	-		GFF5544	0.63	-0.8
172,725	-		GFF5544	0.63	-0.2
172,725	-		GFF5544	0.63	+1.0
172,725	-		GFF5544	0.63	-1.6
172,725	-		GFF5544	0.63	+0.3
172,725	-		GFF5544	0.63	-1.3
172,725	-		GFF5544	0.63	-1.2
172,725	-		GFF5544	0.63	+0.5
172,725	-		GFF5544	0.63	-1.1
172,725	-		GFF5544	0.63	-0.5
172,725	-		GFF5544	0.63	+0.6
172,725	-		GFF5544	0.63	-0.9
172,725	-		GFF5544	0.63	-0.0
172,725	-		GFF5544	0.63	-1.5
172,725	-		GFF5544	0.63	+0.4
172,763	+		GFF5544	0.67	-0.3
172,763	+		GFF5544	0.67	+1.0
172,763	+		GFF5544	0.67	-0.0
172,763	+		GFF5544	0.67	-2.6
172,763	+		GFF5544	0.67	+0.5
172,763	+		GFF5544	0.67	-2.9
172,763	+		GFF5544	0.67	-0.3
172,763	+		GFF5544	0.67	-0.3
172,763	+		GFF5544	0.67	+1.0
172,763	+		GFF5544	0.67	-2.2
172,764	-		GFF5544	0.67	+0.4
172,764	-		GFF5544	0.67	+1.9
172,764	-		GFF5544	0.67	+1.9
172,764	-		GFF5544	0.67	-0.1
172,764	-		GFF5544	0.67	+1.8
172,764	-		GFF5544	0.67	+2.8
172,764	-		GFF5544	0.67	-2.1
172,764	-		GFF5544	0.67	-1.4
172,764	-		GFF5544	0.67	-1.0
172,865	+		GFF5544	0.78	-1.3
172,865	+		GFF5544	0.78	-1.5
172,865	+		GFF5544	0.78	-3.4
172,865	+		GFF5544	0.78	+0.9
172,865	+		GFF5544	0.78	-0.3
172,866	-		GFF5544	0.78	-0.3
172,866	-		GFF5544	0.78	+1.5
172,913	+		GFF5544	0.83	+0.5
172,914	-		GFF5544	0.83	-1.0
173,013	+				+0.6
173,013	+				-0.5
173,013	+				-1.2
173,014	-				-2.7
173,014	-				-1.1
173,014	-				+0.1
173,057	+				+1.2
173,057	+				-0.7
173,057	+				+1.1
173,058	-				-2.5
173,058	-				+1.2
173,406	+		GFF5545	0.46	-0.3
173,451	+		GFF5545	0.53	-1.1
173,451	+		GFF5545	0.53	+0.3
173,451	+		GFF5545	0.53	-1.8
173,452	-		GFF5545	0.53	-1.1
173,452	-		GFF5545	0.53	+0.9
173,556	+		GFF5545	0.68	-1.5
173,559	+		GFF5545	0.69	-1.1
173,559	+		GFF5545	0.69	-3.7
173,559	+		GFF5545	0.69	-2.0
173,559	+		GFF5545	0.69	+1.9
173,559	+		GFF5545	0.69	+1.3
173,559	+		GFF5545	0.69	-0.9
173,559	+		GFF5545	0.69	-0.2
173,559	+		GFF5545	0.69	-0.2
173,560	-		GFF5545	0.69	+1.6
173,560	-		GFF5545	0.69	+1.4
173,560	-		GFF5545	0.69	+0.9
173,560	-		GFF5545	0.69	-0.4
173,631	+		GFF5545	0.79	-0.4
173,632	-		GFF5545	0.80	+0.8
173,632	-		GFF5545	0.80	-3.8
173,632	-		GFF5545	0.80	-0.9
173,632	-		GFF5545	0.80	+2.5
173,632	-		GFF5545	0.80	-0.7
174,009	+		GFF5546	0.25	+1.0
174,010	-		GFF5546	0.25	-1.0
174,081	+		GFF5546	0.34	+1.1
174,081	+		GFF5546	0.34	-0.4
174,081	+		GFF5546	0.34	-3.1
174,081	+		GFF5546	0.34	+2.0
174,082	-		GFF5546	0.35	-1.5
174,082	-		GFF5546	0.35	+1.4
174,082	-		GFF5546	0.35	-0.0
174,136	-		GFF5546	0.42	+0.2
174,136	-		GFF5546	0.42	+0.3
174,159	+		GFF5546	0.45	-0.1
174,159	+		GFF5546	0.45	-1.8
174,159	+		GFF5546	0.45	+1.3
174,159	+		GFF5546	0.45	+0.1
174,159	+		GFF5546	0.45	-0.0
174,159	+		GFF5546	0.45	+2.6
174,159	+		GFF5546	0.45	-0.3
174,159	+		GFF5546	0.45	-1.5
174,159	+		GFF5546	0.45	-0.4
174,159	+		GFF5546	0.45	+2.2
174,160	-		GFF5546	0.45	-0.9
174,160	-		GFF5546	0.45	-3.1
174,160	-		GFF5546	0.45	-0.3
174,160	-		GFF5546	0.45	-2.2
174,160	-		GFF5546	0.45	-3.4
174,325	-		GFF5546	0.66	-0.7
174,325	-		GFF5546	0.66	-0.6
174,325	-		GFF5546	0.66	+0.5