Strain Fitness in Variovorax sp. SCN45 around GFF5334

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5333 and GFF5334 are separated by 101 nucleotidesGFF5334 and GFF5335 overlap by 4 nucleotidesGFF5335 and GFF5336 are separated by 38 nucleotides GFF5333 - Glutamate synthase [NADPH] small chain (EC 1.4.1.13), at 213,855 to 215,333 GFF5333 GFF5334 - Phospholipid ABC transporter ATP-binding protein MlaF, at 215,435 to 216,262 GFF5334 GFF5335 - Phospholipid ABC transporter permease protein MlaE, at 216,259 to 217,041 GFF5335 GFF5336 - Phospholipid ABC transporter substrate-binding protein MlaD, at 217,080 to 217,571 GFF5336 Position (kb) 215 216 217Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 214.891 kb on - strand, within GFF5333at 215.190 kb on + strandat 215.191 kb on - strandat 215.191 kb on - strandat 215.466 kb on + strandat 215.466 kb on + strandat 215.466 kb on + strandat 215.467 kb on - strandat 215.467 kb on - strandat 215.681 kb on + strand, within GFF5334at 215.681 kb on + strand, within GFF5334at 215.682 kb on - strand, within GFF5334at 215.942 kb on + strand, within GFF5334at 215.942 kb on + strand, within GFF5334at 215.942 kb on + strand, within GFF5334at 215.942 kb on + strand, within GFF5334at 215.943 kb on - strand, within GFF5334at 215.943 kb on - strand, within GFF5334at 215.943 kb on - strand, within GFF5334at 215.943 kb on - strand, within GFF5334at 215.943 kb on - strand, within GFF5334at 215.943 kb on - strand, within GFF5334at 215.943 kb on - strand, within GFF5334at 215.943 kb on - strand, within GFF5334at 215.943 kb on - strand, within GFF5334at 216.323 kb on - strandat 216.418 kb on + strand, within GFF5335at 216.418 kb on + strand, within GFF5335at 216.418 kb on + strand, within GFF5335at 216.418 kb on + strand, within GFF5335at 216.418 kb on + strand, within GFF5335at 216.419 kb on - strand, within GFF5335at 216.419 kb on - strand, within GFF5335at 216.419 kb on - strand, within GFF5335at 216.419 kb on - strand, within GFF5335at 216.428 kb on + strand, within GFF5335at 216.481 kb on + strand, within GFF5335at 216.481 kb on + strand, within GFF5335at 216.481 kb on + strand, within GFF5335at 216.481 kb on + strand, within GFF5335at 216.481 kb on + strand, within GFF5335at 216.481 kb on + strand, within GFF5335at 216.481 kb on + strand, within GFF5335at 216.481 kb on + strand, within GFF5335at 216.481 kb on + strand, within GFF5335at 216.481 kb on + strand, within GFF5335at 216.481 kb on + strand, within GFF5335at 216.481 kb on + strand, within GFF5335at 216.481 kb on + strand, within GFF5335at 216.481 kb on + strand, within GFF5335at 216.482 kb on - strand, within GFF5335at 216.482 kb on - strand, within GFF5335at 216.482 kb on - strand, within GFF5335at 216.482 kb on - strand, within GFF5335at 216.482 kb on - strand, within GFF5335at 216.482 kb on - strand, within GFF5335at 216.482 kb on - strand, within GFF5335at 216.482 kb on - strand, within GFF5335at 216.482 kb on - strand, within GFF5335at 216.482 kb on - strand, within GFF5335at 216.484 kb on + strand, within GFF5335at 216.484 kb on + strand, within GFF5335at 216.484 kb on + strand, within GFF5335at 216.484 kb on + strand, within GFF5335at 216.484 kb on + strand, within GFF5335at 216.485 kb on - strand, within GFF5335at 216.485 kb on - strand, within GFF5335at 216.485 kb on - strand, within GFF5335at 216.485 kb on - strand, within GFF5335at 216.499 kb on + strand, within GFF5335at 216.500 kb on - strand, within GFF5335at 216.598 kb on - strand, within GFF5335at 216.770 kb on - strand, within GFF5335at 216.770 kb on - strand, within GFF5335at 216.770 kb on - strand, within GFF5335at 216.770 kb on - strand, within GFF5335at 216.922 kb on + strand, within GFF5335at 216.922 kb on + strand, within GFF5335at 216.922 kb on + strand, within GFF5335at 216.922 kb on + strand, within GFF5335at 216.922 kb on + strand, within GFF5335at 216.923 kb on - strand, within GFF5335at 216.923 kb on - strand, within GFF5335at 216.923 kb on - strand, within GFF5335at 216.923 kb on - strand, within GFF5335at 217.035 kb on + strandat 217.036 kb on - strandat 217.036 kb on - strandat 217.036 kb on - strandat 217.039 kb on + strandat 217.039 kb on + strandat 217.039 kb on + strandat 217.040 kb on - strandat 217.040 kb on - strandat 217.040 kb on - strandat 217.040 kb on - strandat 217.040 kb on - strandat 217.040 kb on - strandat 217.040 kb on - strandat 217.040 kb on - strandat 217.040 kb on - strandat 217.040 kb on - strandat 217.040 kb on - strandat 217.065 kb on + strandat 217.197 kb on + strand, within GFF5336at 217.197 kb on + strand, within GFF5336at 217.197 kb on + strand, within GFF5336at 217.198 kb on - strand, within GFF5336at 217.198 kb on - strand, within GFF5336at 217.198 kb on - strand, within GFF5336at 217.198 kb on - strand, within GFF5336

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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214,891 - GFF5333 0.70 -1.9
215,190 + -2.4
215,191 - -2.3
215,191 - -1.5
215,466 + +0.5
215,466 + -2.1
215,466 + -0.7
215,467 - -2.3
215,467 - +0.8
215,681 + GFF5334 0.30 -0.6
215,681 + GFF5334 0.30 -2.7
215,682 - GFF5334 0.30 +2.0
215,942 + GFF5334 0.61 -1.6
215,942 + GFF5334 0.61 -1.7
215,942 + GFF5334 0.61 -3.2
215,942 + GFF5334 0.61 -2.0
215,943 - GFF5334 0.61 +0.1
215,943 - GFF5334 0.61 -0.3
215,943 - GFF5334 0.61 -1.5
215,943 - GFF5334 0.61 -0.5
215,943 - GFF5334 0.61 -2.9
215,943 - GFF5334 0.61 -1.5
215,943 - GFF5334 0.61 -1.0
215,943 - GFF5334 0.61 +0.3
215,943 - GFF5334 0.61 -2.0
216,323 - -3.2
216,418 + GFF5335 0.20 -1.9
216,418 + GFF5335 0.20 +0.0
216,418 + GFF5335 0.20 +1.8
216,418 + GFF5335 0.20 -3.1
216,418 + GFF5335 0.20 -0.8
216,419 - GFF5335 0.20 -0.3
216,419 - GFF5335 0.20 -2.2
216,419 - GFF5335 0.20 -4.4
216,419 - GFF5335 0.20 -0.6
216,428 + GFF5335 0.22 -2.9
216,481 + GFF5335 0.28 +2.0
216,481 + GFF5335 0.28 -1.7
216,481 + GFF5335 0.28 -0.3
216,481 + GFF5335 0.28 -2.7
216,481 + GFF5335 0.28 -0.6
216,481 + GFF5335 0.28 +1.0
216,481 + GFF5335 0.28 -2.2
216,481 + GFF5335 0.28 -0.9
216,481 + GFF5335 0.28 +1.0
216,481 + GFF5335 0.28 -0.5
216,481 + GFF5335 0.28 +1.0
216,481 + GFF5335 0.28 -2.0
216,481 + GFF5335 0.28 -2.0
216,481 + GFF5335 0.28 -1.4
216,482 - GFF5335 0.28 +0.0
216,482 - GFF5335 0.28 -1.9
216,482 - GFF5335 0.28 +0.0
216,482 - GFF5335 0.28 -1.1
216,482 - GFF5335 0.28 -1.2
216,482 - GFF5335 0.28 -0.3
216,482 - GFF5335 0.28 +0.0
216,482 - GFF5335 0.28 +1.1
216,482 - GFF5335 0.28 -0.3
216,482 - GFF5335 0.28 +3.8
216,484 + GFF5335 0.29 -1.2
216,484 + GFF5335 0.29 -1.1
216,484 + GFF5335 0.29 -3.3
216,484 + GFF5335 0.29 -1.7
216,484 + GFF5335 0.29 -2.6
216,485 - GFF5335 0.29 -1.2
216,485 - GFF5335 0.29 +0.0
216,485 - GFF5335 0.29 -4.5
216,485 - GFF5335 0.29 +0.3
216,499 + GFF5335 0.31 -1.6
216,500 - GFF5335 0.31 -1.7
216,598 - GFF5335 0.43 -2.1
216,770 - GFF5335 0.65 -0.6
216,770 - GFF5335 0.65 -1.1
216,770 - GFF5335 0.65 -2.5
216,770 - GFF5335 0.65 -2.2
216,922 + GFF5335 0.85 -1.6
216,922 + GFF5335 0.85 -3.1
216,922 + GFF5335 0.85 -1.2
216,922 + GFF5335 0.85 -2.2
216,922 + GFF5335 0.85 -1.6
216,923 - GFF5335 0.85 -0.6
216,923 - GFF5335 0.85 -1.0
216,923 - GFF5335 0.85 -0.9
216,923 - GFF5335 0.85 -2.6
217,035 + -1.5
217,036 - +0.2
217,036 - -0.5
217,036 - -1.0
217,039 + +1.4
217,039 + -1.3
217,039 + -1.5
217,040 - +0.5
217,040 - +0.6
217,040 - -1.1
217,040 - -2.8
217,040 - +0.0
217,040 - +2.3
217,040 - -1.5
217,040 - +0.8
217,040 - -2.9
217,040 - -0.6
217,040 - -0.7
217,065 + +0.5
217,197 + GFF5336 0.24 +0.6
217,197 + GFF5336 0.24 +2.2
217,197 + GFF5336 0.24 +0.5
217,198 - GFF5336 0.24 +1.4
217,198 - GFF5336 0.24 -0.6
217,198 - GFF5336 0.24 -0.5
217,198 - GFF5336 0.24 -1.8

Or see this region's nucleotide sequence