Strain Fitness in Variovorax sp. SCN45 around GFF5298

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5296 and GFF5297 overlap by 4 nucleotidesGFF5297 and GFF5298 are separated by 171 nucleotidesGFF5298 and GFF5299 are separated by 71 nucleotides GFF5296 - putative iron-regulated membrane protein, at 169,982 to 171,154 GFF5296 GFF5297 - hypothetical protein, at 171,151 to 171,345 GFF5297 GFF5298 - FIG01204242: hypothetical protein, at 171,517 to 173,733 GFF5298 GFF5299 - TonB-dependent receptor, at 173,805 to 175,940 GFF5299 Position (kb) 171 172 173 174Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 170.646 kb on - strand, within GFF5296at 170.646 kb on - strand, within GFF5296at 170.646 kb on - strand, within GFF5296at 170.646 kb on - strand, within GFF5296at 170.654 kb on + strand, within GFF5296at 170.655 kb on - strand, within GFF5296at 170.655 kb on - strand, within GFF5296at 170.684 kb on + strand, within GFF5296at 170.685 kb on - strand, within GFF5296at 170.930 kb on + strand, within GFF5296at 170.931 kb on - strand, within GFF5296at 170.931 kb on - strand, within GFF5296at 170.976 kb on - strand, within GFF5296at 171.050 kb on + strandat 171.051 kb on - strandat 171.051 kb on - strandat 171.343 kb on + strandat 171.413 kb on + strandat 171.414 kb on - strandat 171.516 kb on + strandat 171.516 kb on + strandat 171.516 kb on + strandat 171.516 kb on + strandat 171.516 kb on + strandat 171.516 kb on + strandat 171.517 kb on - strandat 171.517 kb on - strandat 171.517 kb on - strandat 171.517 kb on - strandat 171.517 kb on - strandat 171.517 kb on - strandat 171.576 kb on - strandat 171.576 kb on - strandat 171.736 kb on + strandat 171.983 kb on - strand, within GFF5298at 171.994 kb on + strand, within GFF5298at 171.994 kb on + strand, within GFF5298at 171.994 kb on + strand, within GFF5298at 171.994 kb on + strand, within GFF5298at 171.995 kb on - strand, within GFF5298at 171.995 kb on - strand, within GFF5298at 172.072 kb on + strand, within GFF5298at 172.072 kb on + strand, within GFF5298at 172.073 kb on - strand, within GFF5298at 172.073 kb on - strand, within GFF5298at 172.120 kb on + strand, within GFF5298at 172.120 kb on + strand, within GFF5298at 172.121 kb on - strand, within GFF5298at 172.121 kb on - strand, within GFF5298at 172.121 kb on - strand, within GFF5298at 172.121 kb on - strand, within GFF5298at 172.121 kb on - strand, within GFF5298at 172.156 kb on + strand, within GFF5298at 172.156 kb on + strand, within GFF5298at 172.157 kb on - strand, within GFF5298at 172.189 kb on + strand, within GFF5298at 172.273 kb on + strand, within GFF5298at 172.273 kb on + strand, within GFF5298at 172.273 kb on + strand, within GFF5298at 172.273 kb on + strand, within GFF5298at 172.273 kb on + strand, within GFF5298at 172.273 kb on + strand, within GFF5298at 172.274 kb on - strand, within GFF5298at 172.280 kb on - strand, within GFF5298at 172.295 kb on - strand, within GFF5298at 172.295 kb on - strand, within GFF5298at 172.295 kb on - strand, within GFF5298at 172.303 kb on + strand, within GFF5298at 172.303 kb on + strand, within GFF5298at 172.303 kb on + strand, within GFF5298at 172.303 kb on + strand, within GFF5298at 172.303 kb on + strand, within GFF5298at 172.303 kb on + strand, within GFF5298at 172.303 kb on + strand, within GFF5298at 172.304 kb on - strand, within GFF5298at 172.304 kb on - strand, within GFF5298at 172.304 kb on - strand, within GFF5298at 172.304 kb on - strand, within GFF5298at 172.309 kb on + strand, within GFF5298at 172.310 kb on - strand, within GFF5298at 172.318 kb on + strand, within GFF5298at 172.318 kb on + strand, within GFF5298at 172.319 kb on - strand, within GFF5298at 172.319 kb on - strand, within GFF5298at 172.447 kb on + strand, within GFF5298at 172.448 kb on - strand, within GFF5298at 172.501 kb on + strand, within GFF5298at 172.501 kb on + strand, within GFF5298at 172.502 kb on - strand, within GFF5298at 172.502 kb on - strand, within GFF5298at 172.505 kb on + strand, within GFF5298at 172.505 kb on + strand, within GFF5298at 172.505 kb on + strand, within GFF5298at 172.506 kb on - strand, within GFF5298at 172.509 kb on + strand, within GFF5298at 172.510 kb on - strand, within GFF5298at 172.556 kb on - strand, within GFF5298at 172.834 kb on + strand, within GFF5298at 172.835 kb on - strand, within GFF5298at 172.835 kb on - strand, within GFF5298at 172.885 kb on + strand, within GFF5298at 172.886 kb on - strand, within GFF5298at 172.886 kb on - strand, within GFF5298at 172.897 kb on + strand, within GFF5298at 172.991 kb on - strand, within GFF5298at 173.009 kb on - strand, within GFF5298at 173.009 kb on - strand, within GFF5298at 173.009 kb on - strand, within GFF5298at 173.080 kb on + strand, within GFF5298at 173.080 kb on + strand, within GFF5298at 173.081 kb on - strand, within GFF5298at 173.081 kb on - strand, within GFF5298at 173.081 kb on - strand, within GFF5298at 173.101 kb on + strand, within GFF5298at 173.102 kb on - strand, within GFF5298at 173.102 kb on - strand, within GFF5298at 173.102 kb on - strand, within GFF5298at 173.102 kb on - strand, within GFF5298at 173.102 kb on - strand, within GFF5298at 173.102 kb on - strand, within GFF5298at 173.329 kb on + strand, within GFF5298at 173.330 kb on - strand, within GFF5298at 173.506 kb on + strand, within GFF5298at 174.078 kb on + strand, within GFF5299at 174.079 kb on - strand, within GFF5299at 174.154 kb on - strand, within GFF5299at 174.264 kb on + strand, within GFF5299at 174.265 kb on - strand, within GFF5299at 174.408 kb on + strand, within GFF5299at 174.409 kb on - strand, within GFF5299at 174.409 kb on - strand, within GFF5299at 174.409 kb on - strand, within GFF5299at 174.624 kb on + strand, within GFF5299at 174.625 kb on - strand, within GFF5299at 174.670 kb on - strand, within GFF5299at 174.670 kb on - strand, within GFF5299

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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170,646 - GFF5296 0.57 +1.9
170,646 - GFF5296 0.57 -0.8
170,646 - GFF5296 0.57 +1.7
170,646 - GFF5296 0.57 -1.8
170,654 + GFF5296 0.57 +0.5
170,655 - GFF5296 0.57 -0.2
170,655 - GFF5296 0.57 +2.0
170,684 + GFF5296 0.60 -0.4
170,685 - GFF5296 0.60 -2.9
170,930 + GFF5296 0.81 -1.5
170,931 - GFF5296 0.81 -2.1
170,931 - GFF5296 0.81 -0.2
170,976 - GFF5296 0.85 +2.4
171,050 + +0.0
171,051 - -0.7
171,051 - +1.0
171,343 + -2.1
171,413 + +0.3
171,414 - -1.7
171,516 + -0.1
171,516 + +3.4
171,516 + -0.3
171,516 + -1.0
171,516 + +0.2
171,516 + +0.2
171,517 - -3.2
171,517 - +0.3
171,517 - +0.9
171,517 - +1.0
171,517 - -0.5
171,517 - -0.6
171,576 - +0.3
171,576 - +0.9
171,736 + -1.2
171,983 - GFF5298 0.21 +2.5
171,994 + GFF5298 0.22 -2.5
171,994 + GFF5298 0.22 +0.1
171,994 + GFF5298 0.22 -0.6
171,994 + GFF5298 0.22 +2.0
171,995 - GFF5298 0.22 -2.5
171,995 - GFF5298 0.22 -3.6
172,072 + GFF5298 0.25 -2.5
172,072 + GFF5298 0.25 +0.5
172,073 - GFF5298 0.25 -1.6
172,073 - GFF5298 0.25 +0.6
172,120 + GFF5298 0.27 -1.8
172,120 + GFF5298 0.27 -2.3
172,121 - GFF5298 0.27 -1.2
172,121 - GFF5298 0.27 -2.9
172,121 - GFF5298 0.27 +2.6
172,121 - GFF5298 0.27 +1.1
172,121 - GFF5298 0.27 +0.8
172,156 + GFF5298 0.29 -0.4
172,156 + GFF5298 0.29 -1.0
172,157 - GFF5298 0.29 +1.7
172,189 + GFF5298 0.30 +0.0
172,273 + GFF5298 0.34 +4.3
172,273 + GFF5298 0.34 -2.4
172,273 + GFF5298 0.34 -3.1
172,273 + GFF5298 0.34 -2.6
172,273 + GFF5298 0.34 -1.2
172,273 + GFF5298 0.34 -2.0
172,274 - GFF5298 0.34 -0.8
172,280 - GFF5298 0.34 -2.2
172,295 - GFF5298 0.35 -0.4
172,295 - GFF5298 0.35 +0.6
172,295 - GFF5298 0.35 +1.3
172,303 + GFF5298 0.35 +0.9
172,303 + GFF5298 0.35 -1.2
172,303 + GFF5298 0.35 +1.0
172,303 + GFF5298 0.35 -1.3
172,303 + GFF5298 0.35 -1.2
172,303 + GFF5298 0.35 +0.2
172,303 + GFF5298 0.35 +0.2
172,304 - GFF5298 0.35 -1.0
172,304 - GFF5298 0.35 -1.7
172,304 - GFF5298 0.35 +3.8
172,304 - GFF5298 0.35 -2.9
172,309 + GFF5298 0.36 -0.3
172,310 - GFF5298 0.36 -0.3
172,318 + GFF5298 0.36 +1.2
172,318 + GFF5298 0.36 -2.2
172,319 - GFF5298 0.36 -2.9
172,319 - GFF5298 0.36 -0.6
172,447 + GFF5298 0.42 +0.8
172,448 - GFF5298 0.42 -3.9
172,501 + GFF5298 0.44 -1.2
172,501 + GFF5298 0.44 -1.6
172,502 - GFF5298 0.44 -0.4
172,502 - GFF5298 0.44 -2.2
172,505 + GFF5298 0.45 +0.0
172,505 + GFF5298 0.45 -0.3
172,505 + GFF5298 0.45 -1.3
172,506 - GFF5298 0.45 -0.2
172,509 + GFF5298 0.45 +1.1
172,510 - GFF5298 0.45 +1.3
172,556 - GFF5298 0.47 -0.2
172,834 + GFF5298 0.59 -0.1
172,835 - GFF5298 0.59 -1.6
172,835 - GFF5298 0.59 +0.5
172,885 + GFF5298 0.62 -1.3
172,886 - GFF5298 0.62 -0.8
172,886 - GFF5298 0.62 +1.6
172,897 + GFF5298 0.62 +2.1
172,991 - GFF5298 0.66 +2.3
173,009 - GFF5298 0.67 +1.0
173,009 - GFF5298 0.67 -4.5
173,009 - GFF5298 0.67 +1.1
173,080 + GFF5298 0.71 -0.2
173,080 + GFF5298 0.71 -3.1
173,081 - GFF5298 0.71 -1.1
173,081 - GFF5298 0.71 -0.3
173,081 - GFF5298 0.71 +2.5
173,101 + GFF5298 0.71 +0.0
173,102 - GFF5298 0.71 -3.2
173,102 - GFF5298 0.71 -2.9
173,102 - GFF5298 0.71 -2.5
173,102 - GFF5298 0.71 -1.2
173,102 - GFF5298 0.71 +1.8
173,102 - GFF5298 0.71 -1.7
173,329 + GFF5298 0.82 +0.0
173,330 - GFF5298 0.82 +0.7
173,506 + GFF5298 0.90 -1.7
174,078 + GFF5299 0.13 +1.0
174,079 - GFF5299 0.13 -0.6
174,154 - GFF5299 0.16 -0.1
174,264 + GFF5299 0.21 -1.4
174,265 - GFF5299 0.22 +2.0
174,408 + GFF5299 0.28 -2.2
174,409 - GFF5299 0.28 +0.1
174,409 - GFF5299 0.28 -3.8
174,409 - GFF5299 0.28 +1.2
174,624 + GFF5299 0.38 -2.1
174,625 - GFF5299 0.38 +2.0
174,670 - GFF5299 0.40 -0.9
174,670 - GFF5299 0.40 +0.8

Or see this region's nucleotide sequence