Strain Fitness in Variovorax sp. SCN45 around GFF5274

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5273 and GFF5274 are separated by 13 nucleotidesGFF5274 and GFF5275 are separated by 17 nucleotides GFF5273 - Various polyols ABC transporter, permease protein 1, at 141,624 to 142,481 GFF5273 GFF5274 - Various polyols ABC transporter, permease protein 2, at 142,495 to 143,331 GFF5274 GFF5275 - Various polyols ABC transporter, ATP-binding protein, at 143,349 to 144,389 GFF5275 Position (kb) 142 143 144Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 141.711 kb on + strand, within GFF5273at 141.712 kb on - strand, within GFF5273at 141.729 kb on + strand, within GFF5273at 141.729 kb on + strand, within GFF5273at 141.729 kb on + strand, within GFF5273at 141.730 kb on - strand, within GFF5273at 141.730 kb on - strand, within GFF5273at 141.730 kb on - strand, within GFF5273at 141.730 kb on - strand, within GFF5273at 141.730 kb on - strand, within GFF5273at 141.783 kb on + strand, within GFF5273at 141.783 kb on + strand, within GFF5273at 141.784 kb on - strand, within GFF5273at 142.005 kb on + strand, within GFF5273at 142.005 kb on + strand, within GFF5273at 142.006 kb on - strand, within GFF5273at 142.006 kb on - strand, within GFF5273at 142.215 kb on + strand, within GFF5273at 142.215 kb on + strand, within GFF5273at 142.350 kb on + strand, within GFF5273at 142.350 kb on + strand, within GFF5273at 142.350 kb on + strand, within GFF5273at 142.350 kb on + strand, within GFF5273at 142.350 kb on + strand, within GFF5273at 142.350 kb on + strand, within GFF5273at 142.350 kb on + strand, within GFF5273at 142.350 kb on + strand, within GFF5273at 142.350 kb on + strand, within GFF5273at 142.351 kb on - strand, within GFF5273at 142.351 kb on - strand, within GFF5273at 142.351 kb on - strand, within GFF5273at 142.351 kb on - strand, within GFF5273at 142.351 kb on - strand, within GFF5273at 142.351 kb on - strand, within GFF5273at 142.351 kb on - strand, within GFF5273at 142.351 kb on - strand, within GFF5273at 142.351 kb on - strand, within GFF5273at 142.351 kb on - strand, within GFF5273at 142.702 kb on + strand, within GFF5274at 142.711 kb on + strand, within GFF5274at 142.711 kb on + strand, within GFF5274at 142.712 kb on - strand, within GFF5274at 142.784 kb on - strand, within GFF5274at 142.882 kb on + strand, within GFF5274at 142.882 kb on + strand, within GFF5274at 142.882 kb on + strand, within GFF5274at 142.882 kb on + strand, within GFF5274at 142.978 kb on + strand, within GFF5274at 142.978 kb on + strand, within GFF5274at 142.978 kb on + strand, within GFF5274at 142.979 kb on - strand, within GFF5274at 142.979 kb on - strand, within GFF5274at 142.987 kb on + strand, within GFF5274at 142.987 kb on + strand, within GFF5274at 142.988 kb on - strand, within GFF5274at 142.988 kb on - strand, within GFF5274at 143.198 kb on - strand, within GFF5274at 143.198 kb on - strand, within GFF5274at 143.198 kb on - strand, within GFF5274at 143.297 kb on + strandat 143.297 kb on + strandat 143.297 kb on + strandat 143.297 kb on + strandat 143.297 kb on + strandat 143.298 kb on - strandat 143.355 kb on + strandat 143.355 kb on + strandat 143.355 kb on + strandat 143.356 kb on - strandat 143.598 kb on + strand, within GFF5275at 143.598 kb on + strand, within GFF5275at 143.626 kb on - strand, within GFF5275at 143.626 kb on - strand, within GFF5275at 143.626 kb on - strand, within GFF5275at 143.695 kb on - strand, within GFF5275at 143.724 kb on + strand, within GFF5275at 143.724 kb on + strand, within GFF5275at 143.725 kb on - strand, within GFF5275at 143.913 kb on + strand, within GFF5275at 143.913 kb on + strand, within GFF5275at 143.913 kb on + strand, within GFF5275at 143.913 kb on + strand, within GFF5275at 143.913 kb on + strand, within GFF5275at 143.914 kb on - strand, within GFF5275at 143.914 kb on - strand, within GFF5275at 143.914 kb on - strand, within GFF5275at 143.914 kb on - strand, within GFF5275at 143.914 kb on - strand, within GFF5275at 143.914 kb on - strand, within GFF5275at 143.914 kb on - strand, within GFF5275at 143.914 kb on - strand, within GFF5275at 143.914 kb on - strand, within GFF5275at 144.012 kb on + strand, within GFF5275at 144.012 kb on + strand, within GFF5275at 144.012 kb on + strand, within GFF5275

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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141,711 + GFF5273 0.10 +0.5
141,712 - GFF5273 0.10 -2.5
141,729 + GFF5273 0.12 +0.0
141,729 + GFF5273 0.12 +0.4
141,729 + GFF5273 0.12 -3.4
141,730 - GFF5273 0.12 -2.4
141,730 - GFF5273 0.12 +0.2
141,730 - GFF5273 0.12 +1.2
141,730 - GFF5273 0.12 +0.7
141,730 - GFF5273 0.12 -0.8
141,783 + GFF5273 0.19 +0.3
141,783 + GFF5273 0.19 +2.3
141,784 - GFF5273 0.19 -2.1
142,005 + GFF5273 0.44 -0.8
142,005 + GFF5273 0.44 -0.6
142,006 - GFF5273 0.45 -2.6
142,006 - GFF5273 0.45 -0.3
142,215 + GFF5273 0.69 -1.6
142,215 + GFF5273 0.69 -2.1
142,350 + GFF5273 0.85 +0.0
142,350 + GFF5273 0.85 -1.5
142,350 + GFF5273 0.85 -1.9
142,350 + GFF5273 0.85 -3.1
142,350 + GFF5273 0.85 +1.1
142,350 + GFF5273 0.85 -0.0
142,350 + GFF5273 0.85 -0.3
142,350 + GFF5273 0.85 +3.0
142,350 + GFF5273 0.85 +2.6
142,351 - GFF5273 0.85 -1.2
142,351 - GFF5273 0.85 -1.6
142,351 - GFF5273 0.85 +0.6
142,351 - GFF5273 0.85 -2.9
142,351 - GFF5273 0.85 -1.9
142,351 - GFF5273 0.85 +1.6
142,351 - GFF5273 0.85 -1.5
142,351 - GFF5273 0.85 -1.5
142,351 - GFF5273 0.85 -0.8
142,351 - GFF5273 0.85 -1.8
142,702 + GFF5274 0.25 -2.1
142,711 + GFF5274 0.26 -2.9
142,711 + GFF5274 0.26 -3.5
142,712 - GFF5274 0.26 -0.0
142,784 - GFF5274 0.35 -1.2
142,882 + GFF5274 0.46 -0.3
142,882 + GFF5274 0.46 -2.3
142,882 + GFF5274 0.46 +0.4
142,882 + GFF5274 0.46 +0.4
142,978 + GFF5274 0.58 -1.7
142,978 + GFF5274 0.58 -1.8
142,978 + GFF5274 0.58 -1.9
142,979 - GFF5274 0.58 +0.8
142,979 - GFF5274 0.58 -3.3
142,987 + GFF5274 0.59 -0.2
142,987 + GFF5274 0.59 -2.6
142,988 - GFF5274 0.59 -1.5
142,988 - GFF5274 0.59 -1.5
143,198 - GFF5274 0.84 -1.4
143,198 - GFF5274 0.84 -1.7
143,198 - GFF5274 0.84 -0.6
143,297 + +0.7
143,297 + -0.8
143,297 + +0.4
143,297 + -2.8
143,297 + -0.9
143,298 - +0.2
143,355 + +0.2
143,355 + -1.5
143,355 + +1.8
143,356 - -0.1
143,598 + GFF5275 0.24 -1.8
143,598 + GFF5275 0.24 +0.6
143,626 - GFF5275 0.27 -0.7
143,626 - GFF5275 0.27 -0.9
143,626 - GFF5275 0.27 -2.9
143,695 - GFF5275 0.33 +2.0
143,724 + GFF5275 0.36 +1.0
143,724 + GFF5275 0.36 -3.4
143,725 - GFF5275 0.36 -0.3
143,913 + GFF5275 0.54 -0.0
143,913 + GFF5275 0.54 -0.1
143,913 + GFF5275 0.54 -3.3
143,913 + GFF5275 0.54 +1.3
143,913 + GFF5275 0.54 -1.2
143,914 - GFF5275 0.54 +0.0
143,914 - GFF5275 0.54 -4.0
143,914 - GFF5275 0.54 +0.6
143,914 - GFF5275 0.54 +2.6
143,914 - GFF5275 0.54 -3.4
143,914 - GFF5275 0.54 -0.9
143,914 - GFF5275 0.54 +0.1
143,914 - GFF5275 0.54 -0.8
143,914 - GFF5275 0.54 +2.9
144,012 + GFF5275 0.64 -0.3
144,012 + GFF5275 0.64 -3.2
144,012 + GFF5275 0.64 +0.4

Or see this region's nucleotide sequence