Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF518 and GFF519 are separated by 145 nucleotides GFF519 and GFF520 overlap by 4 nucleotides
GFF518 - Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains, at 556,972 to 558,504
GFF518
GFF519 - Transcriptional regulator, AcrR family, at 558,650 to 559,345
GFF519
GFF520 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 559,342 to 560,868
GFF520
Position (kb) 558
559
560 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 557.957 kb on + strand, within GFF518 at 557.957 kb on + strand, within GFF518 at 557.957 kb on + strand, within GFF518 at 557.957 kb on + strand, within GFF518 at 557.957 kb on + strand, within GFF518 at 557.957 kb on + strand, within GFF518 at 557.958 kb on - strand, within GFF518 at 557.958 kb on - strand, within GFF518 at 557.958 kb on - strand, within GFF518 at 557.958 kb on - strand, within GFF518 at 557.993 kb on + strand, within GFF518 at 557.994 kb on - strand, within GFF518 at 558.364 kb on + strand at 558.364 kb on + strand at 558.364 kb on + strand at 558.364 kb on + strand at 558.365 kb on - strand at 558.365 kb on - strand at 558.515 kb on + strand at 558.516 kb on - strand at 558.516 kb on - strand at 558.582 kb on - strand at 558.606 kb on - strand at 558.606 kb on - strand at 558.606 kb on - strand at 558.639 kb on + strand at 558.639 kb on + strand at 558.827 kb on + strand, within GFF519 at 558.828 kb on - strand, within GFF519 at 558.828 kb on - strand, within GFF519 at 558.828 kb on - strand, within GFF519 at 558.830 kb on + strand, within GFF519 at 558.830 kb on + strand, within GFF519 at 558.830 kb on + strand, within GFF519 at 558.830 kb on + strand, within GFF519 at 558.830 kb on + strand, within GFF519 at 558.831 kb on - strand, within GFF519 at 558.831 kb on - strand, within GFF519 at 558.831 kb on - strand, within GFF519 at 558.831 kb on - strand, within GFF519 at 558.855 kb on - strand, within GFF519 at 558.949 kb on + strand, within GFF519 at 558.949 kb on + strand, within GFF519 at 558.950 kb on - strand, within GFF519 at 558.950 kb on - strand, within GFF519 at 558.950 kb on - strand, within GFF519 at 558.950 kb on - strand, within GFF519 at 558.950 kb on - strand, within GFF519 at 559.190 kb on + strand, within GFF519 at 559.191 kb on - strand, within GFF519 at 559.191 kb on - strand, within GFF519 at 559.191 kb on - strand, within GFF519 at 559.191 kb on - strand, within GFF519 at 559.191 kb on - strand, within GFF519 at 559.191 kb on - strand, within GFF519 at 559.191 kb on - strand, within GFF519 at 559.734 kb on + strand, within GFF520 at 559.734 kb on + strand, within GFF520 at 559.734 kb on + strand, within GFF520 at 559.734 kb on + strand, within GFF520 at 559.735 kb on - strand, within GFF520 at 559.735 kb on - strand, within GFF520 at 559.918 kb on + strand, within GFF520 at 559.918 kb on + strand, within GFF520 at 560.260 kb on + strand, within GFF520 at 560.261 kb on - strand, within GFF520 at 560.261 kb on - strand, within GFF520 at 560.261 kb on - strand, within GFF520 at 560.261 kb on - strand, within GFF520 at 560.261 kb on - strand, within GFF520
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 557,957 + GFF518 0.64 -0.1 557,957 + GFF518 0.64 -1.3 557,957 + GFF518 0.64 -1.5 557,957 + GFF518 0.64 -1.1 557,957 + GFF518 0.64 -2.9 557,957 + GFF518 0.64 -3.2 557,958 - GFF518 0.64 -2.2 557,958 - GFF518 0.64 +0.1 557,958 - GFF518 0.64 +0.3 557,958 - GFF518 0.64 -0.2 557,993 + GFF518 0.67 -0.7 557,994 - GFF518 0.67 -1.1 558,364 + +1.5 558,364 + -1.1 558,364 + -2.2 558,364 + -1.7 558,365 - -2.2 558,365 - +0.2 558,515 + -2.2 558,516 - -2.8 558,516 - -3.4 558,582 - -0.1 558,606 - -1.2 558,606 - -0.8 558,606 - +0.0 558,639 + -0.7 558,639 + +0.6 558,827 + GFF519 0.25 -2.6 558,828 - GFF519 0.26 -1.1 558,828 - GFF519 0.26 -1.5 558,828 - GFF519 0.26 -0.2 558,830 + GFF519 0.26 +0.4 558,830 + GFF519 0.26 +0.6 558,830 + GFF519 0.26 -0.5 558,830 + GFF519 0.26 -4.7 558,830 + GFF519 0.26 -0.1 558,831 - GFF519 0.26 -0.8 558,831 - GFF519 0.26 -0.2 558,831 - GFF519 0.26 -0.8 558,831 - GFF519 0.26 -0.8 558,855 - GFF519 0.29 -2.0 558,949 + GFF519 0.43 +0.2 558,949 + GFF519 0.43 +0.9 558,950 - GFF519 0.43 -1.8 558,950 - GFF519 0.43 -0.6 558,950 - GFF519 0.43 -0.9 558,950 - GFF519 0.43 +1.2 558,950 - GFF519 0.43 +1.5 559,190 + GFF519 0.78 +0.2 559,191 - GFF519 0.78 -0.2 559,191 - GFF519 0.78 -2.5 559,191 - GFF519 0.78 -0.2 559,191 - GFF519 0.78 -0.0 559,191 - GFF519 0.78 -0.8 559,191 - GFF519 0.78 -0.8 559,191 - GFF519 0.78 -0.1 559,734 + GFF520 0.26 -0.1 559,734 + GFF520 0.26 +1.6 559,734 + GFF520 0.26 +1.4 559,734 + GFF520 0.26 -2.2 559,735 - GFF520 0.26 -0.9 559,735 - GFF520 0.26 -2.2 559,918 + GFF520 0.38 -1.0 559,918 + GFF520 0.38 +0.6 560,260 + GFF520 0.60 -0.5 560,261 - GFF520 0.60 -2.9 560,261 - GFF520 0.60 -1.4 560,261 - GFF520 0.60 +1.4 560,261 - GFF520 0.60 -1.3 560,261 - GFF520 0.60 -2.2
Or see this region's nucleotide sequence