Strain Fitness in Variovorax sp. SCN45 around GFF508

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF506 and GFF507 are separated by 62 nucleotidesGFF507 and GFF508 overlap by 4 nucleotidesGFF508 and GFF509 are separated by 16 nucleotidesGFF509 and GFF510 overlap by 4 nucleotides GFF506 - hypothetical protein, at 548,123 to 548,629 GFF506 GFF507 - Hydrolase, alpha/beta fold family, at 548,692 to 549,585 GFF507 GFF508 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 549,582 to 550,649 GFF508 GFF509 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 550,666 to 551,646 GFF509 GFF510 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 551,643 to 552,371 GFF510 Position (kb) 549 550 551Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 548.613 kb on + strandat 548.613 kb on + strandat 548.613 kb on + strandat 548.613 kb on + strandat 548.613 kb on + strandat 548.613 kb on + strandat 548.614 kb on - strandat 548.921 kb on + strand, within GFF507at 548.921 kb on + strand, within GFF507at 548.921 kb on + strand, within GFF507at 548.921 kb on + strand, within GFF507at 548.921 kb on + strand, within GFF507at 548.922 kb on - strand, within GFF507at 548.967 kb on - strand, within GFF507at 549.059 kb on + strand, within GFF507at 549.122 kb on + strand, within GFF507at 549.261 kb on + strand, within GFF507at 549.261 kb on + strand, within GFF507at 549.261 kb on + strand, within GFF507at 549.261 kb on + strand, within GFF507at 549.261 kb on + strand, within GFF507at 549.323 kb on + strand, within GFF507at 549.324 kb on - strand, within GFF507at 549.338 kb on + strand, within GFF507at 549.338 kb on + strand, within GFF507at 549.338 kb on + strand, within GFF507at 549.338 kb on + strand, within GFF507at 549.338 kb on + strand, within GFF507at 549.338 kb on + strand, within GFF507at 549.338 kb on + strand, within GFF507at 549.338 kb on + strand, within GFF507at 549.339 kb on - strand, within GFF507at 549.339 kb on - strand, within GFF507at 549.339 kb on - strand, within GFF507at 549.339 kb on - strand, within GFF507at 549.339 kb on - strand, within GFF507at 549.339 kb on - strand, within GFF507at 549.545 kb on + strandat 549.546 kb on - strandat 549.631 kb on + strandat 549.631 kb on + strandat 549.631 kb on + strandat 549.631 kb on + strandat 549.632 kb on - strandat 549.632 kb on - strandat 549.632 kb on - strandat 549.632 kb on - strandat 549.632 kb on - strandat 549.634 kb on + strandat 549.754 kb on + strand, within GFF508at 549.754 kb on + strand, within GFF508at 549.755 kb on - strand, within GFF508at 549.799 kb on + strand, within GFF508at 549.799 kb on + strand, within GFF508at 549.800 kb on - strand, within GFF508at 549.883 kb on + strand, within GFF508at 549.884 kb on - strand, within GFF508at 549.958 kb on + strand, within GFF508at 549.958 kb on + strand, within GFF508at 549.959 kb on - strand, within GFF508at 549.959 kb on - strand, within GFF508at 550.093 kb on + strand, within GFF508at 550.093 kb on + strand, within GFF508at 550.093 kb on + strand, within GFF508at 550.093 kb on + strand, within GFF508at 550.093 kb on + strand, within GFF508at 550.093 kb on + strand, within GFF508at 550.094 kb on - strand, within GFF508at 550.094 kb on - strand, within GFF508at 550.094 kb on - strand, within GFF508at 550.096 kb on + strand, within GFF508at 550.096 kb on + strand, within GFF508at 550.096 kb on + strand, within GFF508at 550.096 kb on + strand, within GFF508at 550.096 kb on + strand, within GFF508at 550.097 kb on - strand, within GFF508at 550.097 kb on - strand, within GFF508at 550.411 kb on + strand, within GFF508at 550.412 kb on - strand, within GFF508at 550.463 kb on - strand, within GFF508at 550.685 kb on + strandat 550.686 kb on - strandat 550.772 kb on + strand, within GFF509at 550.772 kb on + strand, within GFF509at 550.772 kb on + strand, within GFF509at 550.772 kb on + strand, within GFF509at 550.772 kb on + strand, within GFF509at 550.772 kb on + strand, within GFF509at 550.773 kb on - strand, within GFF509at 550.773 kb on - strand, within GFF509at 550.773 kb on - strand, within GFF509at 550.773 kb on - strand, within GFF509at 550.773 kb on - strand, within GFF509at 550.773 kb on - strand, within GFF509at 550.773 kb on - strand, within GFF509at 550.773 kb on - strand, within GFF509at 551.647 kb on - strandat 551.647 kb on - strandat 551.647 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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548,613 + +2.4
548,613 + -1.2
548,613 + -2.3
548,613 + -1.9
548,613 + +0.7
548,613 + -2.2
548,614 - -1.7
548,921 + GFF507 0.26 -2.8
548,921 + GFF507 0.26 -0.3
548,921 + GFF507 0.26 +0.3
548,921 + GFF507 0.26 -0.0
548,921 + GFF507 0.26 +0.0
548,922 - GFF507 0.26 -1.5
548,967 - GFF507 0.31 +1.5
549,059 + GFF507 0.41 +0.2
549,122 + GFF507 0.48 +1.9
549,261 + GFF507 0.64 -0.7
549,261 + GFF507 0.64 -0.8
549,261 + GFF507 0.64 -1.1
549,261 + GFF507 0.64 -1.1
549,261 + GFF507 0.64 -0.5
549,323 + GFF507 0.71 -1.3
549,324 - GFF507 0.71 -1.9
549,338 + GFF507 0.72 +0.7
549,338 + GFF507 0.72 +0.5
549,338 + GFF507 0.72 -2.0
549,338 + GFF507 0.72 -0.4
549,338 + GFF507 0.72 -0.3
549,338 + GFF507 0.72 -4.0
549,338 + GFF507 0.72 -0.2
549,338 + GFF507 0.72 +1.0
549,339 - GFF507 0.72 +0.5
549,339 - GFF507 0.72 -0.6
549,339 - GFF507 0.72 +1.1
549,339 - GFF507 0.72 -2.3
549,339 - GFF507 0.72 +0.2
549,339 - GFF507 0.72 +0.6
549,545 + -0.2
549,546 - +3.4
549,631 + -1.1
549,631 + -1.1
549,631 + -2.4
549,631 + +3.0
549,632 - +1.3
549,632 - -0.8
549,632 - +0.4
549,632 - -1.5
549,632 - -0.1
549,634 + -1.5
549,754 + GFF508 0.16 -1.1
549,754 + GFF508 0.16 -0.5
549,755 - GFF508 0.16 +2.6
549,799 + GFF508 0.20 -0.5
549,799 + GFF508 0.20 -0.5
549,800 - GFF508 0.20 +0.4
549,883 + GFF508 0.28 -1.7
549,884 - GFF508 0.28 -0.9
549,958 + GFF508 0.35 +1.2
549,958 + GFF508 0.35 -0.1
549,959 - GFF508 0.35 -2.1
549,959 - GFF508 0.35 -0.2
550,093 + GFF508 0.48 -1.5
550,093 + GFF508 0.48 -2.3
550,093 + GFF508 0.48 -2.3
550,093 + GFF508 0.48 +2.3
550,093 + GFF508 0.48 -1.0
550,093 + GFF508 0.48 -0.8
550,094 - GFF508 0.48 +0.5
550,094 - GFF508 0.48 -0.3
550,094 - GFF508 0.48 -2.8
550,096 + GFF508 0.48 +0.5
550,096 + GFF508 0.48 +2.1
550,096 + GFF508 0.48 -0.7
550,096 + GFF508 0.48 +1.0
550,096 + GFF508 0.48 -2.7
550,097 - GFF508 0.48 +1.6
550,097 - GFF508 0.48 -0.4
550,411 + GFF508 0.78 +0.7
550,412 - GFF508 0.78 +0.9
550,463 - GFF508 0.82 -2.4
550,685 + -0.5
550,686 - -1.3
550,772 + GFF509 0.11 -1.5
550,772 + GFF509 0.11 -1.7
550,772 + GFF509 0.11 +1.7
550,772 + GFF509 0.11 -1.3
550,772 + GFF509 0.11 -2.0
550,772 + GFF509 0.11 +0.4
550,773 - GFF509 0.11 +0.3
550,773 - GFF509 0.11 +2.2
550,773 - GFF509 0.11 -2.5
550,773 - GFF509 0.11 -2.4
550,773 - GFF509 0.11 -3.4
550,773 - GFF509 0.11 -2.9
550,773 - GFF509 0.11 +1.6
550,773 - GFF509 0.11 +1.7
551,647 - -3.1
551,647 - +1.0
551,647 - -0.9

Or see this region's nucleotide sequence