Strain Fitness in Variovorax sp. SCN45 around GFF4994

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
92,656	+				-3.8
92,657	-				-0.9
92,666	+				-0.0
92,666	+				-3.6
92,666	+				-1.7
92,667	-				-0.3
92,763	-		GFF4993	0.10	-1.7
92,763	-		GFF4993	0.10	-0.5
92,763	-		GFF4993	0.10	-1.5
92,763	-		GFF4993	0.10	-0.1
92,780	+		GFF4993	0.12	+2.1
92,885	+		GFF4993	0.25	-0.8
92,886	-		GFF4993	0.25	+0.4
92,886	-		GFF4993	0.25	-0.8
92,886	-		GFF4993	0.25	+0.6
92,886	-		GFF4993	0.25	-1.5
92,886	-		GFF4993	0.25	+0.4
92,902	-		GFF4993	0.27	+0.7
92,975	+		GFF4993	0.36	+1.2
92,975	+		GFF4993	0.36	-0.6
92,975	+		GFF4993	0.36	+1.9
92,975	+		GFF4993	0.36	-1.8
92,975	+		GFF4993	0.36	+0.6
92,975	+		GFF4993	0.36	-0.6
92,975	+		GFF4993	0.36	-1.0
92,975	+		GFF4993	0.36	-4.0
92,975	+		GFF4993	0.36	-1.8
92,975	+		GFF4993	0.36	-0.4
92,975	+		GFF4993	0.36	-0.6
92,975	+		GFF4993	0.36	+0.1
92,975	+		GFF4993	0.36	-1.8
92,975	+		GFF4993	0.36	-0.8
92,976	-		GFF4993	0.36	+0.7
92,976	-		GFF4993	0.36	-1.2
92,976	-		GFF4993	0.36	-1.1
92,976	-		GFF4993	0.36	-0.2
92,976	-		GFF4993	0.36	+0.1
92,976	-		GFF4993	0.36	-0.3
92,976	-		GFF4993	0.36	-1.2
92,976	-		GFF4993	0.36	+0.4
92,976	-		GFF4993	0.36	+1.4
92,976	-		GFF4993	0.36	+1.2
92,976	-		GFF4993	0.36	-1.1
92,976	-		GFF4993	0.36	-0.1
92,976	-		GFF4993	0.36	-1.2
92,976	-		GFF4993	0.36	+0.5
92,976	-		GFF4993	0.36	-0.8
92,976	-		GFF4993	0.36	-0.2
92,976	-		GFF4993	0.36	+0.6
92,976	-		GFF4993	0.36	-1.1
92,976	-		GFF4993	0.36	-0.2
92,976	-		GFF4993	0.36	-1.3
92,984	+		GFF4993	0.37	-1.3
92,984	+		GFF4993	0.37	-1.2
92,984	+		GFF4993	0.37	-0.6
92,985	-		GFF4993	0.37	+2.2
92,985	-		GFF4993	0.37	+0.2
92,985	-		GFF4993	0.37	-2.5
92,985	-		GFF4993	0.37	-0.2
92,985	-		GFF4993	0.37	+0.6
92,985	-		GFF4993	0.37	-1.3
92,985	-		GFF4993	0.37	-0.8
93,086	+		GFF4993	0.49	+0.6
93,087	-		GFF4993	0.49	-0.7
93,087	-		GFF4993	0.49	-1.6
93,087	-		GFF4993	0.49	-1.9
93,098	+		GFF4993	0.50	-1.6
93,098	+		GFF4993	0.50	-0.2
93,098	+		GFF4993	0.50	-0.2
93,099	-		GFF4993	0.50	-3.9
93,099	-		GFF4993	0.50	-1.8
93,099	-		GFF4993	0.50	-2.9
93,099	-		GFF4993	0.50	-0.1
93,099	-		GFF4993	0.50	-1.5
93,099	-		GFF4993	0.50	-2.1
93,099	-		GFF4993	0.50	-1.1
93,099	-		GFF4993	0.50	+1.0
93,113	+		GFF4993	0.52	-1.9
93,113	+		GFF4993	0.52	+0.2
93,113	+		GFF4993	0.52	-3.3
93,114	-		GFF4993	0.52	+1.9
93,114	-		GFF4993	0.52	+0.2
93,114	-		GFF4993	0.52	+1.2
93,180	+		GFF4993	0.60	-1.1
93,290	+		GFF4993	0.73	+2.4
93,290	+		GFF4993	0.73	-0.7
93,291	-		GFF4993	0.73	+1.5
93,291	-		GFF4993	0.73	-0.6
93,291	-		GFF4993	0.73	+0.6
93,374	+		GFF4993	0.83	-2.4
93,374	+		GFF4993	0.83	-3.4
93,374	+		GFF4993	0.83	-2.6
93,375	-		GFF4993	0.83	-2.5
93,375	-		GFF4993	0.83	+1.1
93,375	-		GFF4993	0.83	-1.2
93,375	-		GFF4993	0.83	-0.6
93,375	-		GFF4993	0.83	+1.8
93,537	+				-2.9
93,547	+				-0.3
93,559	+				-2.3
93,559	+				-0.6
93,559	+				-3.2
93,559	+				-2.3
93,560	-				+0.3
93,560	-				-0.5
93,560	-				-1.9
93,560	-				-2.0
93,688	+		GFF4994	0.35	-0.3
93,688	+		GFF4994	0.35	-1.8
93,688	+		GFF4994	0.35	-1.8
93,688	+		GFF4994	0.35	+0.9
93,688	+		GFF4994	0.35	-1.2
93,688	+		GFF4994	0.35	-1.7
93,688	+		GFF4994	0.35	+0.8
93,688	+		GFF4994	0.35	-1.7
93,688	+		GFF4994	0.35	+1.4
93,689	-		GFF4994	0.35	-2.5
93,689	-		GFF4994	0.35	+0.2
93,689	-		GFF4994	0.35	-1.5
93,689	-		GFF4994	0.35	+1.4
93,689	-		GFF4994	0.35	-0.9
93,820	-		GFF4994	0.86	+2.4
93,823	+		GFF4994	0.87	-0.9
93,823	+		GFF4994	0.87	-0.6
93,823	+		GFF4994	0.87	-0.4
93,823	+		GFF4994	0.87	-0.6
93,823	+		GFF4994	0.87	-2.8
93,823	+		GFF4994	0.87	+0.3
93,823	+		GFF4994	0.87	+1.9
93,823	+		GFF4994	0.87	-0.6
93,823	+		GFF4994	0.87	-2.5
93,823	+		GFF4994	0.87	-0.8
93,823	+		GFF4994	0.87	-1.6
93,823	+		GFF4994	0.87	+1.3
93,823	+		GFF4994	0.87	-2.7
93,823	+		GFF4994	0.87	+0.2
93,823	+		GFF4994	0.87	+0.9
93,823	+		GFF4994	0.87	+1.6
93,823	+		GFF4994	0.87	-1.3
93,823	+		GFF4994	0.87	+0.5
93,823	+		GFF4994	0.87	-0.9
93,823	+		GFF4994	0.87	-2.1
93,824	-		GFF4994	0.88	+2.7
93,824	-		GFF4994	0.88	+1.1
93,824	-		GFF4994	0.88	-0.6
93,824	-		GFF4994	0.88	-1.8
93,824	-		GFF4994	0.88	-1.5
93,824	-		GFF4994	0.88	+1.4
93,824	-		GFF4994	0.88	+1.6
93,824	-		GFF4994	0.88	+0.7
93,824	-		GFF4994	0.88	-2.4
94,051	+		GFF4995	0.20	-2.8
94,051	+		GFF4995	0.20	-1.8
94,051	+		GFF4995	0.20	-0.8
94,051	+		GFF4995	0.20	-3.4
94,051	+		GFF4995	0.20	+1.6
94,051	+		GFF4995	0.20	-2.4
94,051	+		GFF4995	0.20	-0.9
94,051	+		GFF4995	0.20	-1.8
94,051	+		GFF4995	0.20	+3.1
94,051	+		GFF4995	0.20	+0.7
94,051	+		GFF4995	0.20	-1.8
94,051	+		GFF4995	0.20	+0.8
94,051	+		GFF4995	0.20	-1.5
94,051	+		GFF4995	0.20	-1.5
94,051	+		GFF4995	0.20	-1.2
94,052	-		GFF4995	0.20	-1.9
94,052	-		GFF4995	0.20	-0.3
94,052	-		GFF4995	0.20	+0.7
94,052	-		GFF4995	0.20	-0.9
94,052	-		GFF4995	0.20	-0.1
94,052	-		GFF4995	0.20	-0.2
94,052	-		GFF4995	0.20	-1.6
94,052	-		GFF4995	0.20	-1.5
94,052	-		GFF4995	0.20	-1.3
94,052	-		GFF4995	0.20	-0.3
94,072	+		GFF4995	0.22	-0.9
94,072	+		GFF4995	0.22	-1.7
94,073	-		GFF4995	0.23	-0.6
94,073	-		GFF4995	0.23	-0.6
94,146	+		GFF4995	0.30	-1.9
94,146	+		GFF4995	0.30	-2.3
94,147	-		GFF4995	0.31	+1.4
94,147	-		GFF4995	0.31	-0.8
94,147	-		GFF4995	0.31	-0.7
94,237	+		GFF4995	0.40	+0.9
94,237	+		GFF4995	0.40	+0.7
94,237	+		GFF4995	0.40	-1.8
94,237	+		GFF4995	0.40	+3.1
94,237	+		GFF4995	0.40	-0.3
94,237	+		GFF4995	0.40	-1.5
94,237	+		GFF4995	0.40	+1.2
94,237	+		GFF4995	0.40	-1.6
94,237	+		GFF4995	0.40	+0.2
94,237	+		GFF4995	0.40	-1.8
94,237	+		GFF4995	0.40	+1.0
94,237	+		GFF4995	0.40	+1.1
94,237	+		GFF4995	0.40	-0.3
94,237	+		GFF4995	0.40	-1.5
94,237	+		GFF4995	0.40	+0.3
94,237	+		GFF4995	0.40	-1.8
94,237	+		GFF4995	0.40	-3.7
94,237	+		GFF4995	0.40	-3.1
94,237	+		GFF4995	0.40	-2.8
94,238	-		GFF4995	0.41	-0.1
94,238	-		GFF4995	0.41	-1.7
94,238	-		GFF4995	0.41	-1.5
94,238	-		GFF4995	0.41	+1.1
94,238	-		GFF4995	0.41	-2.1
94,238	-		GFF4995	0.41	-2.7
94,238	-		GFF4995	0.41	-3.7
94,238	-		GFF4995	0.41	-0.9
94,238	-		GFF4995	0.41	-3.0
94,238	-		GFF4995	0.41	-2.9
94,238	-		GFF4995	0.41	-2.6
94,238	-		GFF4995	0.41	-0.7
94,238	-		GFF4995	0.41	-0.0
94,238	-		GFF4995	0.41	-1.6
94,238	-		GFF4995	0.41	+0.2
94,238	-		GFF4995	0.41	-1.2
94,238	-		GFF4995	0.41	-0.8
94,238	-		GFF4995	0.41	-0.9
94,238	-		GFF4995	0.41	-0.3
94,238	-		GFF4995	0.41	-0.3
94,238	-		GFF4995	0.41	+0.7
94,238	-		GFF4995	0.41	+0.7
94,238	-		GFF4995	0.41	-0.4
94,238	-		GFF4995	0.41	-1.6
94,238	-		GFF4995	0.41	-2.6
94,238	-		GFF4995	0.41	-0.8
94,238	-		GFF4995	0.41	+1.1
94,411	+		GFF4995	0.59	+0.2
94,411	+		GFF4995	0.59	-0.6
94,412	-		GFF4995	0.60	-4.2
94,412	-		GFF4995	0.60	+0.9
94,412	-		GFF4995	0.60	-1.9
94,432	+		GFF4995	0.62	-0.7
94,432	+		GFF4995	0.62	-1.8
94,432	+		GFF4995	0.62	-1.3
94,433	-		GFF4995	0.62	+1.8
94,433	-		GFF4995	0.62	+0.4
94,433	-		GFF4995	0.62	+2.2
94,433	-		GFF4995	0.62	-1.3
94,456	+		GFF4995	0.64	-2.2
94,456	+		GFF4995	0.64	+0.2
94,456	+		GFF4995	0.64	-1.5
94,456	+		GFF4995	0.64	-1.0
94,456	+		GFF4995	0.64	-0.7
94,456	+		GFF4995	0.64	+1.3
94,456	+		GFF4995	0.64	-1.6
94,456	+		GFF4995	0.64	+3.1
94,456	+		GFF4995	0.64	+1.2
94,456	+		GFF4995	0.64	-0.1
94,456	+		GFF4995	0.64	-0.9
94,456	+		GFF4995	0.64	-0.6
94,457	-		GFF4995	0.64	+1.1
94,457	-		GFF4995	0.64	+2.2
94,457	-		GFF4995	0.64	+0.2
94,457	-		GFF4995	0.64	-2.1
94,457	-		GFF4995	0.64	-0.1
94,457	-		GFF4995	0.64	-1.7
94,457	-		GFF4995	0.64	-0.1
94,457	-		GFF4995	0.64	-0.9
94,520	-		GFF4995	0.71	-0.6
94,520	-		GFF4995	0.71	-0.9
94,520	-		GFF4995	0.71	-1.7
94,520	-		GFF4995	0.71	-1.5
94,567	+		GFF4995	0.77	-1.9
94,567	+		GFF4995	0.77	-1.8
94,567	+		GFF4995	0.77	+0.7
94,567	+		GFF4995	0.77	+1.9
94,567	+		GFF4995	0.77	-2.3
94,567	+		GFF4995	0.77	+0.7
94,567	+		GFF4995	0.77	-0.8
94,567	+		GFF4995	0.77	-1.8
94,568	-		GFF4995	0.77	+0.7
94,568	-		GFF4995	0.77	-2.7
94,568	-		GFF4995	0.77	-2.1
94,568	-		GFF4995	0.77	-0.4
94,568	-		GFF4995	0.77	+1.6
94,568	-		GFF4995	0.77	-0.5
94,568	-		GFF4995	0.77	-0.8
94,674	+		GFF4995	0.88	+0.5
94,674	+		GFF4995	0.88	-1.3
94,674	+		GFF4995	0.88	-1.1
94,674	+		GFF4995	0.88	+1.0
94,675	-		GFF4995	0.88	-0.1
94,678	+		GFF4995	0.89	-2.3
94,678	+		GFF4995	0.89	+1.5
94,678	+		GFF4995	0.89	-0.9
94,678	+		GFF4995	0.89	-0.2
94,678	+		GFF4995	0.89	-0.9
94,678	+		GFF4995	0.89	-0.3
94,678	+		GFF4995	0.89	+0.7
94,678	+		GFF4995	0.89	-1.0
94,678	+		GFF4995	0.89	+0.3
94,679	-		GFF4995	0.89	-1.0
94,679	-		GFF4995	0.89	+1.5
94,679	-		GFF4995	0.89	+0.1
94,679	-		GFF4995	0.89	-0.5
94,841	+				+2.0
94,841	+				+1.2