Strain Fitness in Variovorax sp. SCN45 around GFF4938

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
30,871	+		GFF4936	0.88	-0.6
30,871	+		GFF4936	0.88	+0.1
30,872	-		GFF4936	0.88	-1.2
30,872	-		GFF4936	0.88	-1.1
30,889	+		GFF4936	0.89	-0.3
30,889	+		GFF4936	0.89	+3.8
30,889	+		GFF4936	0.89	+1.2
30,889	+		GFF4936	0.89	-0.8
30,889	+		GFF4936	0.89	-1.0
30,889	+		GFF4936	0.89	-1.5
30,889	+		GFF4936	0.89	-0.8
30,890	-		GFF4936	0.89	+1.5
30,890	-		GFF4936	0.89	-2.9
30,890	-		GFF4936	0.89	-2.1
31,146	-				-1.0
31,146	-				-2.7
31,211	+		GFF4937	0.20	-1.3
31,212	-		GFF4937	0.21	-0.9
31,212	-		GFF4937	0.21	+1.1
31,430	+		GFF4937	0.66	+0.0
31,430	+		GFF4937	0.66	+0.5
31,431	-		GFF4937	0.66	+5.6
31,431	-		GFF4937	0.66	-0.5
31,431	-		GFF4937	0.66	-3.1
31,847	-		GFF4938	0.35	-0.3
31,870	+		GFF4938	0.39	-0.3
31,870	+		GFF4938	0.39	-0.9
31,870	+		GFF4938	0.39	+0.9
31,870	+		GFF4938	0.39	-1.8
31,870	+		GFF4938	0.39	+0.1
31,870	+		GFF4938	0.39	+1.8
31,870	+		GFF4938	0.39	-1.1
31,871	-		GFF4938	0.39	+0.8
31,871	-		GFF4938	0.39	-0.8
31,871	-		GFF4938	0.39	+1.4
31,871	-		GFF4938	0.39	-1.1
31,871	-		GFF4938	0.39	-0.8
31,871	-		GFF4938	0.39	+1.2
31,871	-		GFF4938	0.39	+1.2
31,871	-		GFF4938	0.39	-1.3
32,068	+		GFF4938	0.65	+0.6
32,068	+		GFF4938	0.65	-0.0
32,068	+		GFF4938	0.65	+0.4
32,068	+		GFF4938	0.65	+1.4
32,068	+		GFF4938	0.65	-1.1
32,069	-		GFF4938	0.66	+0.5
32,069	-		GFF4938	0.66	-0.6
32,069	-		GFF4938	0.66	+0.3
32,069	-		GFF4938	0.66	-2.5
32,069	-		GFF4938	0.66	+0.6
32,069	-		GFF4938	0.66	-1.1
32,069	-		GFF4938	0.66	-1.8
32,155	+		GFF4938	0.77	+0.3
32,155	+		GFF4938	0.77	-0.6
32,155	+		GFF4938	0.77	-1.6
32,155	+		GFF4938	0.77	-1.6
32,155	+		GFF4938	0.77	+3.8
32,156	-		GFF4938	0.77	-0.8
32,156	-		GFF4938	0.77	+0.4
32,156	-		GFF4938	0.77	+0.2
32,156	-		GFF4938	0.77	+0.2
32,156	-		GFF4938	0.77	+0.8
32,156	-		GFF4938	0.77	-1.3
32,337	+				-0.1
32,338	-				-0.4
32,368	+				-0.1
32,368	+				-0.6
32,368	+				+0.6
32,368	+				+0.3
32,368	+				-0.6
32,368	+				-1.2
32,368	+				+0.0
32,368	+				-0.5
32,368	+				-1.9
32,368	+				-2.6
32,368	+				-0.9
32,368	+				+0.4
32,369	-				+2.1
32,369	-				+0.8
32,369	-				-1.5
32,369	-				+0.9
32,542	+		GFF4939	0.21	-0.5
32,542	+		GFF4939	0.21	-2.3
32,543	-		GFF4939	0.21	-1.0
32,543	-		GFF4939	0.21	-0.6
32,543	-		GFF4939	0.21	-1.5
32,543	-		GFF4939	0.21	-1.5
32,543	-		GFF4939	0.21	+0.2
32,726	+		GFF4939	0.50	+0.6
32,726	+		GFF4939	0.50	-1.6
32,726	+		GFF4939	0.50	+2.1
32,726	+		GFF4939	0.50	-3.3
32,727	-		GFF4939	0.50	+2.8
32,727	-		GFF4939	0.50	-2.3
32,727	-		GFF4939	0.50	-2.6
32,727	-		GFF4939	0.50	+0.1
32,771	+		GFF4939	0.57	-1.2
32,771	+		GFF4939	0.57	+0.9
32,771	+		GFF4939	0.57	-0.3
32,772	-		GFF4939	0.58	+1.6
32,772	-		GFF4939	0.58	+1.0
32,772	-		GFF4939	0.58	+0.4
32,789	+		GFF4939	0.60	+0.6
32,789	+		GFF4939	0.60	-0.3
32,789	+		GFF4939	0.60	+0.7
32,789	+		GFF4939	0.60	-0.8
32,789	+		GFF4939	0.60	-0.6
32,790	-		GFF4939	0.60	-3.2
32,790	-		GFF4939	0.60	-0.6
32,790	-		GFF4939	0.60	-2.6
32,790	-		GFF4939	0.60	-2.6
32,790	-		GFF4939	0.60	+1.3
32,790	-		GFF4939	0.60	-0.3
32,905	+		GFF4939	0.79	+0.9
32,905	+		GFF4939	0.79	-0.3
32,906	-		GFF4939	0.79	+0.5
32,906	-		GFF4939	0.79	+3.1
32,906	-		GFF4939	0.79	-0.2
32,906	-		GFF4939	0.79	-0.5
32,906	-		GFF4939	0.79	-2.4
32,906	-		GFF4939	0.79	+0.1
33,046	-				-3.5
33,046	-				-4.8
33,122	-				+0.8
33,122	-				-1.1
33,126	+				-2.6
33,126	+				-1.1
33,126	+				-1.3
33,126	+				+1.1
33,126	+				-1.2
33,126	+				-1.5
33,126	+				-0.3
33,127	-				+1.2
33,127	-				-2.5
33,127	-				+1.7