Strain Fitness in Variovorax sp. SCN45 around GFF4930

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4929 and GFF4930 are separated by 103 nucleotidesGFF4930 and GFF4931 overlap by 17 nucleotides GFF4929 - Aminotransferase, class III, at 21,754 to 23,166 GFF4929 GFF4930 - Transcriptional regulator, LysR family, at 23,270 to 24,187 GFF4930 GFF4931 - peptidase, family M14, at 24,171 to 25,904 GFF4931 Position (kb) 23 24 25Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 22.283 kb on + strand, within GFF4929at 22.284 kb on - strand, within GFF4929at 22.394 kb on + strand, within GFF4929at 22.395 kb on - strand, within GFF4929at 22.395 kb on - strand, within GFF4929at 22.604 kb on + strand, within GFF4929at 22.604 kb on + strand, within GFF4929at 22.605 kb on - strand, within GFF4929at 22.653 kb on - strand, within GFF4929at 22.653 kb on - strand, within GFF4929at 22.653 kb on - strand, within GFF4929at 22.653 kb on - strand, within GFF4929at 22.653 kb on - strand, within GFF4929at 22.712 kb on + strand, within GFF4929at 22.712 kb on + strand, within GFF4929at 22.712 kb on + strand, within GFF4929at 22.713 kb on - strand, within GFF4929at 22.770 kb on - strand, within GFF4929at 22.770 kb on - strand, within GFF4929at 23.039 kb on + strandat 23.039 kb on + strandat 23.039 kb on + strandat 23.039 kb on + strandat 23.040 kb on - strandat 23.040 kb on - strandat 23.040 kb on - strandat 23.040 kb on - strandat 23.040 kb on - strandat 23.040 kb on - strandat 23.040 kb on - strandat 23.040 kb on - strandat 23.040 kb on - strandat 23.093 kb on + strandat 23.093 kb on + strandat 23.093 kb on + strandat 23.093 kb on + strandat 23.094 kb on - strandat 23.175 kb on - strandat 23.175 kb on - strandat 23.210 kb on - strandat 23.233 kb on - strandat 23.238 kb on + strandat 23.239 kb on - strandat 23.258 kb on + strandat 23.259 kb on - strandat 23.259 kb on - strandat 23.263 kb on - strandat 23.379 kb on + strand, within GFF4930at 23.380 kb on - strand, within GFF4930at 23.380 kb on - strand, within GFF4930at 23.861 kb on + strand, within GFF4930at 23.861 kb on + strand, within GFF4930at 23.862 kb on - strand, within GFF4930at 23.862 kb on - strand, within GFF4930at 23.862 kb on - strand, within GFF4930at 23.862 kb on - strand, within GFF4930at 24.105 kb on - strandat 24.391 kb on + strand, within GFF4931at 24.391 kb on + strand, within GFF4931at 24.391 kb on + strand, within GFF4931at 24.391 kb on + strand, within GFF4931at 24.392 kb on - strand, within GFF4931at 24.392 kb on - strand, within GFF4931at 24.392 kb on - strand, within GFF4931at 24.392 kb on - strand, within GFF4931at 24.392 kb on - strand, within GFF4931at 24.631 kb on + strand, within GFF4931at 24.632 kb on - strand, within GFF4931at 24.820 kb on + strand, within GFF4931at 24.821 kb on - strand, within GFF4931at 24.835 kb on + strand, within GFF4931at 24.835 kb on + strand, within GFF4931at 24.835 kb on + strand, within GFF4931at 24.835 kb on + strand, within GFF4931at 24.835 kb on + strand, within GFF4931at 24.835 kb on + strand, within GFF4931at 24.836 kb on - strand, within GFF4931at 24.836 kb on - strand, within GFF4931at 24.872 kb on - strand, within GFF4931at 25.186 kb on + strand, within GFF4931at 25.186 kb on + strand, within GFF4931

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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22,283 + GFF4929 0.37 +2.4
22,284 - GFF4929 0.38 -1.9
22,394 + GFF4929 0.45 +0.7
22,395 - GFF4929 0.45 -0.0
22,395 - GFF4929 0.45 +3.4
22,604 + GFF4929 0.60 +1.2
22,604 + GFF4929 0.60 -1.7
22,605 - GFF4929 0.60 -1.7
22,653 - GFF4929 0.64 -1.6
22,653 - GFF4929 0.64 -1.1
22,653 - GFF4929 0.64 +2.1
22,653 - GFF4929 0.64 -0.9
22,653 - GFF4929 0.64 -0.6
22,712 + GFF4929 0.68 -1.4
22,712 + GFF4929 0.68 -1.5
22,712 + GFF4929 0.68 +0.4
22,713 - GFF4929 0.68 +1.0
22,770 - GFF4929 0.72 +0.7
22,770 - GFF4929 0.72 +0.4
23,039 + -0.3
23,039 + +1.2
23,039 + -1.1
23,039 + -0.1
23,040 - -2.1
23,040 - -0.7
23,040 - -1.5
23,040 - -2.4
23,040 - -2.3
23,040 - +1.8
23,040 - -1.3
23,040 - +0.7
23,040 - +0.7
23,093 + +0.8
23,093 + -0.3
23,093 + -0.8
23,093 + -0.3
23,094 - -0.9
23,175 - +2.2
23,175 - -2.4
23,210 - -1.3
23,233 - -2.2
23,238 + +0.2
23,239 - -1.9
23,258 + -1.6
23,259 - -0.2
23,259 - -2.3
23,263 - +0.5
23,379 + GFF4930 0.12 -1.9
23,380 - GFF4930 0.12 -1.5
23,380 - GFF4930 0.12 -0.4
23,861 + GFF4930 0.64 -0.7
23,861 + GFF4930 0.64 +2.9
23,862 - GFF4930 0.64 -1.1
23,862 - GFF4930 0.64 +0.7
23,862 - GFF4930 0.64 -1.1
23,862 - GFF4930 0.64 +3.0
24,105 - -2.1
24,391 + GFF4931 0.13 -0.4
24,391 + GFF4931 0.13 -1.3
24,391 + GFF4931 0.13 +0.1
24,391 + GFF4931 0.13 +0.3
24,392 - GFF4931 0.13 +0.4
24,392 - GFF4931 0.13 -0.5
24,392 - GFF4931 0.13 -2.4
24,392 - GFF4931 0.13 +0.6
24,392 - GFF4931 0.13 -1.1
24,631 + GFF4931 0.27 -0.9
24,632 - GFF4931 0.27 -1.2
24,820 + GFF4931 0.37 -1.8
24,821 - GFF4931 0.37 -0.2
24,835 + GFF4931 0.38 +0.9
24,835 + GFF4931 0.38 -0.8
24,835 + GFF4931 0.38 +0.3
24,835 + GFF4931 0.38 -1.8
24,835 + GFF4931 0.38 -3.3
24,835 + GFF4931 0.38 +1.0
24,836 - GFF4931 0.38 -2.3
24,836 - GFF4931 0.38 +0.9
24,872 - GFF4931 0.40 -1.6
25,186 + GFF4931 0.59 -0.3
25,186 + GFF4931 0.59 -0.7

Or see this region's nucleotide sequence