Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4915 and GFF4916 are separated by 48 nucleotides GFF4916 and GFF4917 are separated by 13 nucleotides
GFF4915 - hypothetical protein, at 7,772 to 9,454
GFF4915
GFF4916 - FIG00959407: hypothetical protein, at 9,503 to 10,102
GFF4916
GFF4917 - no description, at 10,116 to 11,918
GFF4917
Position (kb) 9
10
11 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 8.517 kb on + strand, within GFF4915 at 8.517 kb on + strand, within GFF4915 at 8.529 kb on + strand, within GFF4915 at 8.530 kb on - strand, within GFF4915 at 8.664 kb on + strand, within GFF4915 at 8.664 kb on + strand, within GFF4915 at 8.664 kb on + strand, within GFF4915 at 8.808 kb on + strand, within GFF4915 at 8.808 kb on + strand, within GFF4915 at 8.808 kb on + strand, within GFF4915 at 8.808 kb on + strand, within GFF4915 at 8.808 kb on + strand, within GFF4915 at 8.808 kb on + strand, within GFF4915 at 8.808 kb on + strand, within GFF4915 at 8.808 kb on + strand, within GFF4915 at 8.809 kb on - strand, within GFF4915 at 8.809 kb on - strand, within GFF4915 at 8.958 kb on + strand, within GFF4915 at 8.958 kb on + strand, within GFF4915 at 8.958 kb on + strand, within GFF4915 at 8.958 kb on + strand, within GFF4915 at 8.959 kb on - strand, within GFF4915 at 8.959 kb on - strand, within GFF4915 at 8.959 kb on - strand, within GFF4915 at 8.959 kb on - strand, within GFF4915 at 8.961 kb on + strand, within GFF4915 at 8.961 kb on + strand, within GFF4915 at 8.961 kb on + strand, within GFF4915 at 8.961 kb on + strand, within GFF4915 at 8.961 kb on + strand, within GFF4915 at 8.961 kb on + strand, within GFF4915 at 8.962 kb on - strand, within GFF4915 at 8.962 kb on - strand, within GFF4915 at 8.962 kb on - strand, within GFF4915 at 8.962 kb on - strand, within GFF4915 at 8.962 kb on - strand, within GFF4915 at 9.378 kb on + strand at 9.378 kb on + strand at 9.378 kb on + strand at 9.378 kb on + strand at 9.378 kb on + strand at 9.378 kb on + strand at 9.379 kb on - strand at 9.379 kb on - strand at 9.379 kb on - strand at 9.379 kb on - strand at 9.379 kb on - strand at 9.379 kb on - strand at 9.379 kb on - strand at 9.483 kb on + strand at 9.483 kb on + strand at 9.483 kb on + strand at 9.483 kb on + strand at 9.484 kb on - strand at 9.484 kb on - strand at 9.484 kb on - strand at 9.529 kb on + strand at 9.529 kb on + strand at 9.529 kb on + strand at 9.530 kb on - strand at 9.588 kb on + strand, within GFF4916 at 9.743 kb on + strand, within GFF4916 at 9.744 kb on - strand, within GFF4916 at 9.985 kb on - strand, within GFF4916 at 9.985 kb on - strand, within GFF4916 at 9.985 kb on - strand, within GFF4916 at 11.096 kb on - strand, within GFF4917 at 11.096 kb on - strand, within GFF4917 at 11.096 kb on - strand, within GFF4917 at 11.096 kb on - strand, within GFF4917
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 8,517 + GFF4915 0.44 -1.2 8,517 + GFF4915 0.44 -0.1 8,529 + GFF4915 0.45 -0.6 8,530 - GFF4915 0.45 +0.7 8,664 + GFF4915 0.53 +0.4 8,664 + GFF4915 0.53 -0.4 8,664 + GFF4915 0.53 +0.7 8,808 + GFF4915 0.62 +0.9 8,808 + GFF4915 0.62 +1.9 8,808 + GFF4915 0.62 -0.6 8,808 + GFF4915 0.62 +1.1 8,808 + GFF4915 0.62 -1.8 8,808 + GFF4915 0.62 -2.8 8,808 + GFF4915 0.62 +1.2 8,808 + GFF4915 0.62 +3.2 8,809 - GFF4915 0.62 +0.4 8,809 - GFF4915 0.62 -1.1 8,958 + GFF4915 0.70 +1.2 8,958 + GFF4915 0.70 -2.5 8,958 + GFF4915 0.70 +0.8 8,958 + GFF4915 0.70 -1.2 8,959 - GFF4915 0.71 +1.0 8,959 - GFF4915 0.71 +0.0 8,959 - GFF4915 0.71 +1.1 8,959 - GFF4915 0.71 -2.8 8,961 + GFF4915 0.71 -0.7 8,961 + GFF4915 0.71 -0.1 8,961 + GFF4915 0.71 -1.7 8,961 + GFF4915 0.71 -0.3 8,961 + GFF4915 0.71 +1.2 8,961 + GFF4915 0.71 +0.5 8,962 - GFF4915 0.71 -1.8 8,962 - GFF4915 0.71 -2.6 8,962 - GFF4915 0.71 +1.0 8,962 - GFF4915 0.71 -1.3 8,962 - GFF4915 0.71 +0.1 9,378 + -1.1 9,378 + +1.2 9,378 + +0.5 9,378 + -2.3 9,378 + -0.8 9,378 + +1.4 9,379 - -0.6 9,379 - -0.2 9,379 - -0.5 9,379 - -0.1 9,379 - +0.5 9,379 - +1.0 9,379 - +1.6 9,483 + +0.9 9,483 + -1.8 9,483 + +0.9 9,483 + +1.7 9,484 - -1.8 9,484 - +0.8 9,484 - -3.1 9,529 + -3.0 9,529 + -3.2 9,529 + +1.0 9,530 - -0.4 9,588 + GFF4916 0.14 +0.2 9,743 + GFF4916 0.40 -2.7 9,744 - GFF4916 0.40 +0.2 9,985 - GFF4916 0.80 +1.8 9,985 - GFF4916 0.80 +1.2 9,985 - GFF4916 0.80 -1.8 11,096 - GFF4917 0.54 +1.1 11,096 - GFF4917 0.54 +0.7 11,096 - GFF4917 0.54 -0.1 11,096 - GFF4917 0.54 +0.5
Or see this region's nucleotide sequence