Strain Fitness in Variovorax sp. SCN45 around GFF49

Experiment: Community=arabino-guar; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF48 and GFF49 are separated by 119 nucleotidesGFF49 and GFF50 are separated by 102 nucleotidesGFF50 and GFF51 are separated by 98 nucleotides GFF48 - DNA double-strand break repair protein Mre11, at 52,990 to 54,117 GFF48 GFF49 - no description, at 54,237 to 54,428 GFF49 GFF50 - Murein hydrolase activator NlpD, at 54,531 to 55,268 GFF50 GFF51 - hypothetical protein, at 55,367 to 56,233 GFF51 Position (kb) 54 55Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 53.375 kb on + strand, within GFF48at 53.375 kb on + strand, within GFF48at 53.375 kb on + strand, within GFF48at 53.492 kb on + strand, within GFF48at 53.493 kb on - strand, within GFF48at 53.546 kb on + strand, within GFF48at 53.547 kb on - strand, within GFF48at 53.547 kb on - strand, within GFF48at 53.705 kb on + strand, within GFF48at 53.705 kb on + strand, within GFF48at 53.705 kb on + strand, within GFF48at 53.706 kb on - strand, within GFF48at 53.706 kb on - strand, within GFF48at 53.706 kb on - strand, within GFF48at 53.706 kb on - strand, within GFF48at 53.706 kb on - strand, within GFF48at 53.706 kb on - strand, within GFF48at 53.706 kb on - strand, within GFF48at 53.706 kb on - strand, within GFF48at 53.706 kb on - strand, within GFF48at 53.706 kb on - strand, within GFF48at 54.082 kb on + strandat 54.082 kb on + strandat 54.082 kb on + strandat 54.083 kb on - strandat 54.083 kb on - strandat 54.083 kb on - strandat 54.083 kb on - strandat 54.083 kb on - strandat 54.175 kb on + strandat 54.175 kb on + strandat 54.175 kb on + strandat 54.175 kb on + strandat 54.175 kb on + strandat 54.175 kb on + strandat 54.175 kb on + strandat 54.175 kb on + strandat 54.175 kb on + strandat 54.175 kb on + strandat 54.176 kb on - strandat 54.176 kb on - strandat 54.176 kb on - strandat 54.176 kb on - strandat 54.176 kb on - strandat 54.176 kb on - strandat 54.176 kb on - strandat 54.176 kb on - strandat 54.176 kb on - strandat 54.176 kb on - strandat 54.430 kb on + strandat 54.430 kb on + strandat 54.430 kb on + strandat 54.430 kb on + strandat 54.430 kb on + strandat 54.430 kb on + strandat 54.430 kb on + strandat 54.430 kb on + strandat 54.430 kb on + strandat 54.430 kb on + strandat 54.430 kb on + strandat 54.430 kb on + strandat 54.430 kb on + strandat 54.430 kb on + strandat 54.430 kb on + strandat 54.430 kb on + strandat 54.431 kb on - strandat 54.431 kb on - strandat 54.431 kb on - strandat 54.431 kb on - strandat 54.431 kb on - strandat 54.431 kb on - strandat 54.431 kb on - strandat 54.431 kb on - strandat 54.431 kb on - strandat 54.431 kb on - strandat 54.431 kb on - strandat 54.431 kb on - strandat 54.431 kb on - strandat 54.431 kb on - strandat 54.431 kb on - strandat 54.547 kb on + strandat 54.547 kb on + strandat 54.547 kb on + strandat 54.547 kb on + strandat 54.548 kb on - strandat 54.548 kb on - strandat 54.548 kb on - strandat 54.548 kb on - strandat 54.548 kb on - strandat 54.548 kb on - strandat 54.694 kb on + strand, within GFF50at 54.694 kb on + strand, within GFF50at 54.694 kb on + strand, within GFF50at 54.694 kb on + strand, within GFF50at 54.695 kb on - strand, within GFF50at 54.704 kb on + strand, within GFF50at 54.704 kb on + strand, within GFF50at 54.704 kb on + strand, within GFF50at 54.704 kb on + strand, within GFF50at 54.704 kb on + strand, within GFF50at 54.704 kb on + strand, within GFF50at 54.704 kb on + strand, within GFF50at 54.704 kb on + strand, within GFF50at 54.704 kb on + strand, within GFF50at 54.705 kb on - strand, within GFF50at 54.705 kb on - strand, within GFF50at 54.705 kb on - strand, within GFF50at 54.705 kb on - strand, within GFF50at 54.705 kb on - strand, within GFF50at 54.705 kb on - strand, within GFF50at 54.705 kb on - strand, within GFF50at 54.705 kb on - strand, within GFF50at 54.705 kb on - strand, within GFF50at 54.705 kb on - strand, within GFF50at 54.705 kb on - strand, within GFF50at 54.705 kb on - strand, within GFF50at 54.705 kb on - strand, within GFF50at 54.705 kb on - strand, within GFF50at 54.705 kb on - strand, within GFF50at 54.705 kb on - strand, within GFF50at 54.705 kb on - strand, within GFF50at 54.705 kb on - strand, within GFF50at 54.705 kb on - strand, within GFF50at 54.705 kb on - strand, within GFF50at 54.705 kb on - strand, within GFF50at 54.705 kb on - strand, within GFF50at 54.705 kb on - strand, within GFF50at 54.705 kb on - strand, within GFF50at 54.705 kb on - strand, within GFF50at 54.705 kb on - strand, within GFF50at 54.705 kb on - strand, within GFF50at 54.706 kb on + strand, within GFF50at 54.706 kb on + strand, within GFF50at 54.706 kb on + strand, within GFF50at 54.706 kb on + strand, within GFF50at 54.706 kb on + strand, within GFF50at 54.706 kb on + strand, within GFF50at 54.706 kb on + strand, within GFF50at 54.706 kb on + strand, within GFF50at 54.706 kb on + strand, within GFF50at 54.706 kb on + strand, within GFF50at 54.706 kb on + strand, within GFF50at 54.706 kb on + strand, within GFF50at 54.706 kb on + strand, within GFF50at 54.706 kb on + strand, within GFF50at 54.706 kb on + strand, within GFF50at 54.706 kb on + strand, within GFF50at 54.706 kb on + strand, within GFF50at 54.706 kb on + strand, within GFF50at 54.706 kb on + strand, within GFF50at 54.706 kb on + strand, within GFF50at 54.706 kb on + strand, within GFF50at 54.706 kb on + strand, within GFF50at 54.706 kb on + strand, within GFF50at 54.706 kb on + strand, within GFF50at 54.706 kb on + strand, within GFF50at 54.706 kb on + strand, within GFF50at 54.707 kb on - strand, within GFF50at 54.707 kb on - strand, within GFF50at 54.707 kb on - strand, within GFF50at 54.707 kb on - strand, within GFF50at 54.707 kb on - strand, within GFF50at 54.707 kb on - strand, within GFF50at 54.707 kb on - strand, within GFF50at 54.707 kb on - strand, within GFF50at 54.707 kb on - strand, within GFF50at 54.707 kb on - strand, within GFF50at 54.707 kb on - strand, within GFF50at 54.707 kb on - strand, within GFF50at 54.707 kb on - strand, within GFF50at 54.707 kb on - strand, within GFF50at 54.707 kb on - strand, within GFF50at 54.707 kb on - strand, within GFF50at 54.707 kb on - strand, within GFF50at 54.707 kb on - strand, within GFF50at 54.707 kb on - strand, within GFF50at 54.707 kb on - strand, within GFF50at 54.707 kb on - strand, within GFF50at 54.707 kb on - strand, within GFF50at 54.707 kb on - strand, within GFF50at 54.707 kb on - strand, within GFF50at 54.707 kb on - strand, within GFF50at 54.707 kb on - strand, within GFF50at 54.707 kb on - strand, within GFF50at 54.707 kb on - strand, within GFF50at 54.707 kb on - strand, within GFF50at 54.707 kb on - strand, within GFF50at 54.821 kb on - strand, within GFF50at 55.135 kb on + strand, within GFF50at 55.136 kb on - strand, within GFF50at 55.136 kb on - strand, within GFF50at 55.162 kb on + strand, within GFF50at 55.162 kb on + strand, within GFF50at 55.163 kb on - strand, within GFF50at 55.163 kb on - strand, within GFF50at 55.163 kb on - strand, within GFF50at 55.163 kb on - strand, within GFF50at 55.163 kb on - strand, within GFF50at 55.303 kb on + strandat 55.303 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
remove
53,375 + GFF48 0.34 -0.1
53,375 + GFF48 0.34 -0.5
53,375 + GFF48 0.34 +0.1
53,492 + GFF48 0.45 +0.7
53,493 - GFF48 0.45 -1.0
53,546 + GFF48 0.49 -2.0
53,547 - GFF48 0.49 -1.7
53,547 - GFF48 0.49 -1.5
53,705 + GFF48 0.63 -3.2
53,705 + GFF48 0.63 -0.2
53,705 + GFF48 0.63 -2.8
53,706 - GFF48 0.63 -0.1
53,706 - GFF48 0.63 +1.0
53,706 - GFF48 0.63 -1.4
53,706 - GFF48 0.63 -0.5
53,706 - GFF48 0.63 -0.6
53,706 - GFF48 0.63 +0.1
53,706 - GFF48 0.63 +0.5
53,706 - GFF48 0.63 -0.5
53,706 - GFF48 0.63 +0.2
53,706 - GFF48 0.63 +1.1
54,082 + -1.1
54,082 + +0.7
54,082 + -1.3
54,083 - -1.1
54,083 - +1.1
54,083 - +0.2
54,083 - -0.1
54,083 - +1.1
54,175 + +0.5
54,175 + -3.6
54,175 + -0.4
54,175 + -0.4
54,175 + +0.5
54,175 + -1.1
54,175 + -0.8
54,175 + +1.9
54,175 + +0.3
54,175 + -1.5
54,176 - -1.3
54,176 - +0.3
54,176 - -0.7
54,176 - +0.4
54,176 - -0.1
54,176 - +2.9
54,176 - -0.1
54,176 - +2.0
54,176 - -4.2
54,176 - -1.2
54,430 + -1.8
54,430 + +1.5
54,430 + +0.9
54,430 + -0.4
54,430 + -0.8
54,430 + -0.3
54,430 + -0.2
54,430 + +0.4
54,430 + +2.0
54,430 + -2.3
54,430 + +1.5
54,430 + -0.2
54,430 + -0.0
54,430 + -2.8
54,430 + -0.5
54,430 + -0.5
54,431 - -0.2
54,431 - +0.7
54,431 - -0.1
54,431 - +1.0
54,431 - +1.5
54,431 - +1.8
54,431 - +0.8
54,431 - +0.9
54,431 - -0.2
54,431 - -0.3
54,431 - +3.1
54,431 - +0.7
54,431 - -1.3
54,431 - +1.3
54,431 - -1.3
54,547 + -2.4
54,547 + -3.2
54,547 + +1.0
54,547 + +0.2
54,548 - -1.8
54,548 - -0.8
54,548 - -1.3
54,548 - +0.2
54,548 - -0.3
54,548 - -0.1
54,694 + GFF50 0.22 -0.5
54,694 + GFF50 0.22 +0.9
54,694 + GFF50 0.22 -0.8
54,694 + GFF50 0.22 -0.2
54,695 - GFF50 0.22 +1.0
54,704 + GFF50 0.23 +0.7
54,704 + GFF50 0.23 +0.7
54,704 + GFF50 0.23 +1.1
54,704 + GFF50 0.23 -2.1
54,704 + GFF50 0.23 +0.4
54,704 + GFF50 0.23 +0.7
54,704 + GFF50 0.23 -0.0
54,704 + GFF50 0.23 +0.4
54,704 + GFF50 0.23 -1.9
54,705 - GFF50 0.24 -0.1
54,705 - GFF50 0.24 +0.2
54,705 - GFF50 0.24 -1.5
54,705 - GFF50 0.24 -4.4
54,705 - GFF50 0.24 +1.5
54,705 - GFF50 0.24 +1.1
54,705 - GFF50 0.24 -4.0
54,705 - GFF50 0.24 -1.8
54,705 - GFF50 0.24 +0.1
54,705 - GFF50 0.24 -1.0
54,705 - GFF50 0.24 +0.1
54,705 - GFF50 0.24 +0.3
54,705 - GFF50 0.24 -0.2
54,705 - GFF50 0.24 -0.1
54,705 - GFF50 0.24 -0.7
54,705 - GFF50 0.24 -2.9
54,705 - GFF50 0.24 -0.1
54,705 - GFF50 0.24 -0.1
54,705 - GFF50 0.24 -0.1
54,705 - GFF50 0.24 -1.5
54,705 - GFF50 0.24 -3.0
54,705 - GFF50 0.24 +1.5
54,705 - GFF50 0.24 +4.5
54,705 - GFF50 0.24 +1.7
54,705 - GFF50 0.24 -0.5
54,705 - GFF50 0.24 -1.1
54,705 - GFF50 0.24 -0.2
54,706 + GFF50 0.24 -0.8
54,706 + GFF50 0.24 -1.6
54,706 + GFF50 0.24 -4.3
54,706 + GFF50 0.24 -1.3
54,706 + GFF50 0.24 -1.1
54,706 + GFF50 0.24 +2.6
54,706 + GFF50 0.24 -3.5
54,706 + GFF50 0.24 -1.8
54,706 + GFF50 0.24 -0.1
54,706 + GFF50 0.24 -0.2
54,706 + GFF50 0.24 -0.8
54,706 + GFF50 0.24 +1.5
54,706 + GFF50 0.24 -1.7
54,706 + GFF50 0.24 +0.9
54,706 + GFF50 0.24 -2.1
54,706 + GFF50 0.24 +0.4
54,706 + GFF50 0.24 -1.8
54,706 + GFF50 0.24 -3.9
54,706 + GFF50 0.24 -3.5
54,706 + GFF50 0.24 +1.2
54,706 + GFF50 0.24 -0.1
54,706 + GFF50 0.24 -0.8
54,706 + GFF50 0.24 -1.5
54,706 + GFF50 0.24 -0.4
54,706 + GFF50 0.24 -4.2
54,706 + GFF50 0.24 +0.5
54,707 - GFF50 0.24 +1.1
54,707 - GFF50 0.24 +0.9
54,707 - GFF50 0.24 -2.8
54,707 - GFF50 0.24 -0.1
54,707 - GFF50 0.24 -1.3
54,707 - GFF50 0.24 -2.8
54,707 - GFF50 0.24 +3.3
54,707 - GFF50 0.24 -2.0
54,707 - GFF50 0.24 +1.7
54,707 - GFF50 0.24 -1.0
54,707 - GFF50 0.24 -0.9
54,707 - GFF50 0.24 -1.8
54,707 - GFF50 0.24 +0.4
54,707 - GFF50 0.24 +1.2
54,707 - GFF50 0.24 -0.3
54,707 - GFF50 0.24 +0.3
54,707 - GFF50 0.24 -2.0
54,707 - GFF50 0.24 -1.8
54,707 - GFF50 0.24 -0.5
54,707 - GFF50 0.24 +0.5
54,707 - GFF50 0.24 -1.3
54,707 - GFF50 0.24 +1.5
54,707 - GFF50 0.24 +0.0
54,707 - GFF50 0.24 -0.5
54,707 - GFF50 0.24 +0.6
54,707 - GFF50 0.24 -1.8
54,707 - GFF50 0.24 -2.9
54,707 - GFF50 0.24 -0.5
54,707 - GFF50 0.24 -2.3
54,707 - GFF50 0.24 +0.0
54,821 - GFF50 0.39 -2.2
55,135 + GFF50 0.82 -0.0
55,136 - GFF50 0.82 +2.0
55,136 - GFF50 0.82 -0.2
55,162 + GFF50 0.86 +2.1
55,162 + GFF50 0.86 -0.1
55,163 - GFF50 0.86 -1.7
55,163 - GFF50 0.86 -0.7
55,163 - GFF50 0.86 +0.0
55,163 - GFF50 0.86 -0.5
55,163 - GFF50 0.86 +0.5
55,303 + -0.5
55,303 + +1.5

Or see this region's nucleotide sequence