Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4851 and GFF4852 are separated by 217 nucleotides GFF4852 and GFF4853 are separated by 25 nucleotides GFF4853 and GFF4854 are separated by 17 nucleotides GFF4854 and GFF4855 are separated by 0 nucleotides
GFF4851 - Coupling protein VirD4, ATPase required for T-DNA transfer, at 220,299 to 222,317
GFF4851
GFF4852 - Conjugative transfer protein TrbK, at 222,535 to 222,765
GFF4852
GFF4853 - Transcriptional regulator, LysR family, at 222,791 to 223,705
GFF4853
GFF4854 - Electron transfer flavoprotein, alpha subunit, at 223,723 to 224,655
GFF4854
GFF4855 - Electron transfer flavoprotein, beta subunit, at 224,656 to 225,405
GFF4855
Position (kb) 222
223
224 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 221.906 kb on - strand, within GFF4851 at 221.906 kb on - strand, within GFF4851 at 221.906 kb on - strand, within GFF4851 at 221.906 kb on - strand, within GFF4851 at 221.906 kb on - strand, within GFF4851 at 221.999 kb on - strand, within GFF4851 at 221.999 kb on - strand, within GFF4851 at 222.054 kb on + strand, within GFF4851 at 222.054 kb on + strand, within GFF4851 at 222.054 kb on + strand, within GFF4851 at 222.054 kb on + strand, within GFF4851 at 222.055 kb on - strand, within GFF4851 at 222.055 kb on - strand, within GFF4851 at 222.055 kb on - strand, within GFF4851 at 222.055 kb on - strand, within GFF4851 at 222.055 kb on - strand, within GFF4851 at 222.055 kb on - strand, within GFF4851 at 222.055 kb on - strand, within GFF4851 at 222.055 kb on - strand, within GFF4851 at 222.055 kb on - strand, within GFF4851 at 222.055 kb on - strand, within GFF4851 at 222.055 kb on - strand, within GFF4851 at 222.108 kb on - strand, within GFF4851 at 222.108 kb on - strand, within GFF4851 at 222.118 kb on + strand at 222.163 kb on + strand at 222.163 kb on + strand at 222.164 kb on - strand at 222.164 kb on - strand at 222.164 kb on - strand at 222.207 kb on + strand at 222.207 kb on + strand at 222.207 kb on + strand at 222.207 kb on + strand at 222.207 kb on + strand at 222.208 kb on - strand at 222.208 kb on - strand at 222.208 kb on - strand at 222.208 kb on - strand at 222.214 kb on + strand at 222.252 kb on + strand at 222.252 kb on + strand at 222.333 kb on + strand at 222.399 kb on - strand at 222.452 kb on - strand at 222.452 kb on - strand at 222.492 kb on + strand at 222.492 kb on + strand at 222.493 kb on - strand at 222.493 kb on - strand at 222.493 kb on - strand at 222.493 kb on - strand at 222.531 kb on + strand at 222.531 kb on + strand at 222.532 kb on - strand at 222.532 kb on - strand at 222.536 kb on + strand at 222.536 kb on + strand at 222.536 kb on + strand at 222.537 kb on - strand at 222.537 kb on - strand at 222.537 kb on - strand at 222.537 kb on - strand at 222.897 kb on + strand, within GFF4853 at 222.897 kb on + strand, within GFF4853 at 222.897 kb on + strand, within GFF4853 at 222.897 kb on + strand, within GFF4853 at 222.897 kb on + strand, within GFF4853 at 222.897 kb on + strand, within GFF4853 at 222.897 kb on + strand, within GFF4853 at 222.897 kb on + strand, within GFF4853 at 222.897 kb on + strand, within GFF4853 at 222.898 kb on - strand, within GFF4853 at 222.898 kb on - strand, within GFF4853 at 222.898 kb on - strand, within GFF4853 at 222.898 kb on - strand, within GFF4853 at 222.898 kb on - strand, within GFF4853 at 222.898 kb on - strand, within GFF4853 at 222.898 kb on - strand, within GFF4853 at 222.898 kb on - strand, within GFF4853 at 222.898 kb on - strand, within GFF4853 at 223.010 kb on + strand, within GFF4853 at 223.010 kb on + strand, within GFF4853 at 223.010 kb on + strand, within GFF4853 at 223.011 kb on - strand, within GFF4853 at 223.011 kb on - strand, within GFF4853 at 223.011 kb on - strand, within GFF4853 at 223.011 kb on - strand, within GFF4853 at 223.011 kb on - strand, within GFF4853 at 223.029 kb on + strand, within GFF4853 at 223.029 kb on + strand, within GFF4853 at 223.030 kb on - strand, within GFF4853 at 223.030 kb on - strand, within GFF4853 at 223.030 kb on - strand, within GFF4853 at 223.030 kb on - strand, within GFF4853 at 223.030 kb on - strand, within GFF4853 at 223.030 kb on - strand, within GFF4853 at 223.030 kb on - strand, within GFF4853 at 223.030 kb on - strand, within GFF4853 at 223.069 kb on - strand, within GFF4853 at 223.069 kb on - strand, within GFF4853 at 223.112 kb on + strand, within GFF4853 at 223.284 kb on + strand, within GFF4853 at 223.284 kb on + strand, within GFF4853 at 223.284 kb on + strand, within GFF4853 at 223.284 kb on + strand, within GFF4853 at 223.284 kb on + strand, within GFF4853 at 223.284 kb on + strand, within GFF4853 at 223.284 kb on + strand, within GFF4853 at 223.284 kb on + strand, within GFF4853 at 223.284 kb on + strand, within GFF4853 at 223.285 kb on - strand, within GFF4853 at 223.285 kb on - strand, within GFF4853 at 223.285 kb on - strand, within GFF4853 at 223.285 kb on - strand, within GFF4853 at 223.589 kb on + strand, within GFF4853 at 223.589 kb on + strand, within GFF4853 at 223.589 kb on + strand, within GFF4853 at 223.590 kb on - strand, within GFF4853 at 223.590 kb on - strand, within GFF4853 at 223.590 kb on - strand, within GFF4853 at 223.676 kb on + strand at 223.677 kb on - strand at 223.677 kb on - strand at 223.678 kb on + strand at 223.679 kb on - strand at 223.679 kb on - strand at 223.679 kb on - strand at 223.679 kb on - strand at 223.679 kb on - strand at 223.710 kb on + strand at 223.710 kb on + strand at 223.710 kb on + strand at 223.710 kb on + strand at 223.710 kb on + strand at 223.710 kb on + strand at 223.710 kb on + strand at 223.710 kb on + strand at 223.710 kb on + strand at 223.711 kb on - strand at 223.711 kb on - strand at 223.711 kb on - strand at 223.711 kb on - strand at 223.711 kb on - strand at 223.711 kb on - strand at 223.711 kb on - strand at 223.711 kb on - strand at 223.711 kb on - strand at 223.778 kb on + strand at 223.892 kb on + strand, within GFF4854 at 223.892 kb on + strand, within GFF4854 at 223.893 kb on - strand, within GFF4854 at 223.893 kb on - strand, within GFF4854 at 223.893 kb on - strand, within GFF4854 at 223.893 kb on - strand, within GFF4854 at 223.893 kb on - strand, within GFF4854 at 223.893 kb on - strand, within GFF4854 at 223.893 kb on - strand, within GFF4854 at 224.123 kb on + strand, within GFF4854 at 224.123 kb on + strand, within GFF4854 at 224.123 kb on + strand, within GFF4854 at 224.123 kb on + strand, within GFF4854 at 224.123 kb on + strand, within GFF4854 at 224.124 kb on - strand, within GFF4854 at 224.124 kb on - strand, within GFF4854 at 224.124 kb on - strand, within GFF4854 at 224.124 kb on - strand, within GFF4854 at 224.124 kb on - strand, within GFF4854 at 224.273 kb on + strand, within GFF4854 at 224.273 kb on + strand, within GFF4854 at 224.273 kb on + strand, within GFF4854 at 224.273 kb on + strand, within GFF4854 at 224.274 kb on - strand, within GFF4854 at 224.274 kb on - strand, within GFF4854 at 224.274 kb on - strand, within GFF4854 at 224.403 kb on + strand, within GFF4854 at 224.403 kb on + strand, within GFF4854 at 224.403 kb on + strand, within GFF4854 at 224.404 kb on - strand, within GFF4854 at 224.404 kb on - strand, within GFF4854 at 224.404 kb on - strand, within GFF4854 at 224.404 kb on - strand, within GFF4854 at 224.405 kb on + strand, within GFF4854 at 224.405 kb on + strand, within GFF4854 at 224.405 kb on + strand, within GFF4854 at 224.405 kb on + strand, within GFF4854 at 224.405 kb on + strand, within GFF4854 at 224.405 kb on + strand, within GFF4854 at 224.405 kb on + strand, within GFF4854 at 224.405 kb on + strand, within GFF4854 at 224.405 kb on + strand, within GFF4854 at 224.405 kb on + strand, within GFF4854 at 224.405 kb on + strand, within GFF4854 at 224.405 kb on + strand, within GFF4854 at 224.405 kb on + strand, within GFF4854 at 224.405 kb on + strand, within GFF4854 at 224.405 kb on + strand, within GFF4854 at 224.405 kb on + strand, within GFF4854 at 224.405 kb on + strand, within GFF4854 at 224.405 kb on + strand, within GFF4854 at 224.405 kb on + strand, within GFF4854 at 224.406 kb on - strand, within GFF4854 at 224.406 kb on - strand, within GFF4854 at 224.406 kb on - strand, within GFF4854 at 224.406 kb on - strand, within GFF4854 at 224.406 kb on - strand, within GFF4854 at 224.406 kb on - strand, within GFF4854 at 224.406 kb on - strand, within GFF4854 at 224.406 kb on - strand, within GFF4854 at 224.406 kb on - strand, within GFF4854 at 224.406 kb on - strand, within GFF4854 at 224.406 kb on - strand, within GFF4854 at 224.647 kb on + strand at 224.657 kb on + strand at 224.657 kb on + strand at 224.657 kb on + strand at 224.657 kb on + strand at 224.657 kb on + strand at 224.657 kb on + strand at 224.657 kb on + strand at 224.658 kb on - strand at 224.658 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 221,906 - GFF4851 0.80 +0.0 221,906 - GFF4851 0.80 -0.1 221,906 - GFF4851 0.80 -0.7 221,906 - GFF4851 0.80 +1.2 221,906 - GFF4851 0.80 +1.4 221,999 - GFF4851 0.84 -3.1 221,999 - GFF4851 0.84 -3.4 222,054 + GFF4851 0.87 +0.5 222,054 + GFF4851 0.87 +1.2 222,054 + GFF4851 0.87 +1.3 222,054 + GFF4851 0.87 -1.1 222,055 - GFF4851 0.87 -2.2 222,055 - GFF4851 0.87 -1.2 222,055 - GFF4851 0.87 +0.2 222,055 - GFF4851 0.87 -2.0 222,055 - GFF4851 0.87 +1.9 222,055 - GFF4851 0.87 -0.6 222,055 - GFF4851 0.87 -2.4 222,055 - GFF4851 0.87 -0.2 222,055 - GFF4851 0.87 +0.0 222,055 - GFF4851 0.87 +2.3 222,055 - GFF4851 0.87 -1.4 222,108 - GFF4851 0.90 +2.0 222,108 - GFF4851 0.90 -1.1 222,118 + +0.1 222,163 + -1.6 222,163 + -1.7 222,164 - +3.2 222,164 - -0.0 222,164 - -2.4 222,207 + -2.1 222,207 + -2.4 222,207 + -2.1 222,207 + +0.1 222,207 + +0.9 222,208 - -0.4 222,208 - -0.8 222,208 - +0.6 222,208 - -2.2 222,214 + -1.2 222,252 + -0.2 222,252 + +0.1 222,333 + -0.4 222,399 - -1.8 222,452 - -0.7 222,452 - +0.3 222,492 + -3.6 222,492 + +1.6 222,493 - +0.3 222,493 - +1.6 222,493 - +2.2 222,493 - -3.4 222,531 + -0.3 222,531 + -2.7 222,532 - -0.3 222,532 - +0.6 222,536 + +1.1 222,536 + -2.3 222,536 + +0.5 222,537 - +0.5 222,537 - -3.6 222,537 - -0.4 222,537 - +1.0 222,897 + GFF4853 0.12 -2.3 222,897 + GFF4853 0.12 -0.2 222,897 + GFF4853 0.12 -1.3 222,897 + GFF4853 0.12 -1.0 222,897 + GFF4853 0.12 -0.5 222,897 + GFF4853 0.12 -0.6 222,897 + GFF4853 0.12 -0.9 222,897 + GFF4853 0.12 -0.8 222,897 + GFF4853 0.12 +1.6 222,898 - GFF4853 0.12 -1.4 222,898 - GFF4853 0.12 -1.3 222,898 - GFF4853 0.12 -2.4 222,898 - GFF4853 0.12 -0.4 222,898 - GFF4853 0.12 -1.4 222,898 - GFF4853 0.12 +0.1 222,898 - GFF4853 0.12 +1.1 222,898 - GFF4853 0.12 -0.5 222,898 - GFF4853 0.12 -0.0 223,010 + GFF4853 0.24 +0.8 223,010 + GFF4853 0.24 -0.4 223,010 + GFF4853 0.24 -3.2 223,011 - GFF4853 0.24 -0.1 223,011 - GFF4853 0.24 +0.6 223,011 - GFF4853 0.24 -0.4 223,011 - GFF4853 0.24 -0.4 223,011 - GFF4853 0.24 +0.2 223,029 + GFF4853 0.26 -0.4 223,029 + GFF4853 0.26 -2.0 223,030 - GFF4853 0.26 +0.2 223,030 - GFF4853 0.26 +0.8 223,030 - GFF4853 0.26 -1.9 223,030 - GFF4853 0.26 +0.6 223,030 - GFF4853 0.26 -0.4 223,030 - GFF4853 0.26 +0.8 223,030 - GFF4853 0.26 +1.1 223,030 - GFF4853 0.26 -1.8 223,069 - GFF4853 0.30 -3.0 223,069 - GFF4853 0.30 -0.7 223,112 + GFF4853 0.35 -2.9 223,284 + GFF4853 0.54 -0.0 223,284 + GFF4853 0.54 -0.9 223,284 + GFF4853 0.54 -0.1 223,284 + GFF4853 0.54 +1.4 223,284 + GFF4853 0.54 -2.6 223,284 + GFF4853 0.54 -0.3 223,284 + GFF4853 0.54 +1.1 223,284 + GFF4853 0.54 +4.0 223,284 + GFF4853 0.54 +0.6 223,285 - GFF4853 0.54 -0.7 223,285 - GFF4853 0.54 -0.4 223,285 - GFF4853 0.54 +0.6 223,285 - GFF4853 0.54 -0.5 223,589 + GFF4853 0.87 -1.8 223,589 + GFF4853 0.87 -1.5 223,589 + GFF4853 0.87 -1.5 223,590 - GFF4853 0.87 -1.2 223,590 - GFF4853 0.87 -0.3 223,590 - GFF4853 0.87 +1.0 223,676 + -0.9 223,677 - -3.9 223,677 - +1.8 223,678 + -2.1 223,679 - -1.7 223,679 - -2.0 223,679 - +0.4 223,679 - +1.6 223,679 - -0.2 223,710 + -1.2 223,710 + +1.3 223,710 + +1.4 223,710 + -0.5 223,710 + +0.4 223,710 + -2.3 223,710 + -0.2 223,710 + +2.2 223,710 + +0.7 223,711 - -2.1 223,711 - -0.1 223,711 - +0.1 223,711 - -2.1 223,711 - +0.2 223,711 - -1.3 223,711 - +0.6 223,711 - -0.7 223,711 - -2.8 223,778 + -2.4 223,892 + GFF4854 0.18 -1.7 223,892 + GFF4854 0.18 +1.6 223,893 - GFF4854 0.18 +2.3 223,893 - GFF4854 0.18 +0.1 223,893 - GFF4854 0.18 -2.1 223,893 - GFF4854 0.18 -0.4 223,893 - GFF4854 0.18 -1.1 223,893 - GFF4854 0.18 -0.4 223,893 - GFF4854 0.18 -0.9 224,123 + GFF4854 0.43 -2.5 224,123 + GFF4854 0.43 +0.6 224,123 + GFF4854 0.43 -1.7 224,123 + GFF4854 0.43 -1.1 224,123 + GFF4854 0.43 -0.7 224,124 - GFF4854 0.43 -2.9 224,124 - GFF4854 0.43 +1.1 224,124 - GFF4854 0.43 +0.3 224,124 - GFF4854 0.43 -1.9 224,124 - GFF4854 0.43 -0.2 224,273 + GFF4854 0.59 -0.6 224,273 + GFF4854 0.59 -2.7 224,273 + GFF4854 0.59 +1.8 224,273 + GFF4854 0.59 +0.6 224,274 - GFF4854 0.59 -2.4 224,274 - GFF4854 0.59 +1.5 224,274 - GFF4854 0.59 -0.5 224,403 + GFF4854 0.73 -0.3 224,403 + GFF4854 0.73 +1.4 224,403 + GFF4854 0.73 +0.6 224,404 - GFF4854 0.73 -0.8 224,404 - GFF4854 0.73 -0.9 224,404 - GFF4854 0.73 +0.1 224,404 - GFF4854 0.73 +3.6 224,405 + GFF4854 0.73 -1.7 224,405 + GFF4854 0.73 -1.4 224,405 + GFF4854 0.73 +1.9 224,405 + GFF4854 0.73 +0.7 224,405 + GFF4854 0.73 +0.1 224,405 + GFF4854 0.73 -0.5 224,405 + GFF4854 0.73 -0.9 224,405 + GFF4854 0.73 -1.7 224,405 + GFF4854 0.73 -0.1 224,405 + GFF4854 0.73 +0.1 224,405 + GFF4854 0.73 -0.0 224,405 + GFF4854 0.73 -1.2 224,405 + GFF4854 0.73 +0.1 224,405 + GFF4854 0.73 -1.5 224,405 + GFF4854 0.73 +1.8 224,405 + GFF4854 0.73 -1.5 224,405 + GFF4854 0.73 -2.4 224,405 + GFF4854 0.73 +1.8 224,405 + GFF4854 0.73 -0.7 224,406 - GFF4854 0.73 -2.3 224,406 - GFF4854 0.73 -0.7 224,406 - GFF4854 0.73 -0.0 224,406 - GFF4854 0.73 -2.0 224,406 - GFF4854 0.73 -1.8 224,406 - GFF4854 0.73 -1.3 224,406 - GFF4854 0.73 +0.6 224,406 - GFF4854 0.73 +0.9 224,406 - GFF4854 0.73 +0.2 224,406 - GFF4854 0.73 -0.5 224,406 - GFF4854 0.73 -0.8 224,647 + -0.1 224,657 + -0.4 224,657 + -2.3 224,657 + +2.1 224,657 + -0.7 224,657 + -2.2 224,657 + +0.5 224,657 + +0.3 224,658 - -2.4 224,658 - +0.3
Or see this region's nucleotide sequence