Strain Fitness in Variovorax sp. SCN45 around GFF4845

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4844 and GFF4845 are separated by 12 nucleotidesGFF4845 and GFF4846 overlap by 4 nucleotides GFF4844 - Conjugative transfer protein TrbL, at 213,520 to 214,872 GFF4844 GFF4845 - Conjugative transfer protein TrbJ, at 214,885 to 215,640 GFF4845 GFF4846 - Conjugative transfer protein TrbE, at 215,637 to 218,114 GFF4846 Position (kb) 214 215 216Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 214.183 kb on + strand, within GFF4844at 214.183 kb on + strand, within GFF4844at 214.183 kb on + strand, within GFF4844at 214.183 kb on + strand, within GFF4844at 214.184 kb on - strand, within GFF4844at 214.184 kb on - strand, within GFF4844at 214.285 kb on + strand, within GFF4844at 214.286 kb on - strand, within GFF4844at 214.646 kb on + strand, within GFF4844at 214.646 kb on + strand, within GFF4844at 214.646 kb on + strand, within GFF4844at 214.647 kb on - strand, within GFF4844at 214.647 kb on - strand, within GFF4844at 214.647 kb on - strand, within GFF4844at 214.664 kb on + strand, within GFF4844at 214.664 kb on + strand, within GFF4844at 214.664 kb on + strand, within GFF4844at 214.664 kb on + strand, within GFF4844at 214.664 kb on + strand, within GFF4844at 214.664 kb on + strand, within GFF4844at 214.664 kb on + strand, within GFF4844at 214.664 kb on + strand, within GFF4844at 214.664 kb on + strand, within GFF4844at 214.664 kb on + strand, within GFF4844at 214.664 kb on + strand, within GFF4844at 214.664 kb on + strand, within GFF4844at 214.664 kb on + strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.665 kb on - strand, within GFF4844at 214.666 kb on + strand, within GFF4844at 214.666 kb on + strand, within GFF4844at 214.666 kb on + strand, within GFF4844at 214.666 kb on + strand, within GFF4844at 214.666 kb on + strand, within GFF4844at 214.666 kb on + strand, within GFF4844at 214.666 kb on + strand, within GFF4844at 214.667 kb on - strand, within GFF4844at 214.667 kb on - strand, within GFF4844at 214.667 kb on - strand, within GFF4844at 214.823 kb on + strandat 214.824 kb on - strandat 214.895 kb on + strandat 214.896 kb on - strandat 214.919 kb on + strandat 214.919 kb on + strandat 214.920 kb on - strandat 215.243 kb on + strand, within GFF4845at 215.243 kb on + strand, within GFF4845at 215.243 kb on + strand, within GFF4845at 215.244 kb on - strand, within GFF4845at 215.244 kb on - strand, within GFF4845at 215.244 kb on - strand, within GFF4845at 215.244 kb on - strand, within GFF4845at 215.273 kb on + strand, within GFF4845at 215.273 kb on + strand, within GFF4845at 215.273 kb on + strand, within GFF4845at 215.273 kb on + strand, within GFF4845at 215.273 kb on + strand, within GFF4845at 215.274 kb on - strand, within GFF4845at 215.274 kb on - strand, within GFF4845at 215.274 kb on - strand, within GFF4845at 215.274 kb on - strand, within GFF4845at 215.286 kb on - strand, within GFF4845at 215.324 kb on + strand, within GFF4845at 215.912 kb on - strand, within GFF4846at 215.912 kb on - strand, within GFF4846at 215.912 kb on - strand, within GFF4846at 215.912 kb on - strand, within GFF4846at 215.912 kb on - strand, within GFF4846at 215.912 kb on - strand, within GFF4846at 215.914 kb on + strand, within GFF4846at 215.981 kb on - strand, within GFF4846at 215.981 kb on - strand, within GFF4846at 215.981 kb on - strand, within GFF4846at 215.981 kb on - strand, within GFF4846at 215.981 kb on - strand, within GFF4846at 216.254 kb on - strand, within GFF4846at 216.254 kb on - strand, within GFF4846at 216.254 kb on - strand, within GFF4846at 216.382 kb on + strand, within GFF4846at 216.382 kb on + strand, within GFF4846at 216.382 kb on + strand, within GFF4846at 216.383 kb on - strand, within GFF4846at 216.383 kb on - strand, within GFF4846at 216.383 kb on - strand, within GFF4846at 216.491 kb on + strand, within GFF4846at 216.492 kb on - strand, within GFF4846at 216.634 kb on + strand, within GFF4846at 216.634 kb on + strand, within GFF4846at 216.634 kb on + strand, within GFF4846at 216.635 kb on - strand, within GFF4846at 216.635 kb on - strand, within GFF4846at 216.635 kb on - strand, within GFF4846

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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214,183 + GFF4844 0.49 -2.9
214,183 + GFF4844 0.49 -0.0
214,183 + GFF4844 0.49 -1.2
214,183 + GFF4844 0.49 -0.4
214,184 - GFF4844 0.49 -3.8
214,184 - GFF4844 0.49 +1.2
214,285 + GFF4844 0.57 -1.2
214,286 - GFF4844 0.57 +0.9
214,646 + GFF4844 0.83 -2.7
214,646 + GFF4844 0.83 -0.7
214,646 + GFF4844 0.83 -2.2
214,647 - GFF4844 0.83 -1.4
214,647 - GFF4844 0.83 +1.9
214,647 - GFF4844 0.83 +1.6
214,664 + GFF4844 0.85 -0.3
214,664 + GFF4844 0.85 -1.2
214,664 + GFF4844 0.85 +1.2
214,664 + GFF4844 0.85 +1.0
214,664 + GFF4844 0.85 +1.5
214,664 + GFF4844 0.85 -0.9
214,664 + GFF4844 0.85 +1.1
214,664 + GFF4844 0.85 -1.2
214,664 + GFF4844 0.85 -3.1
214,664 + GFF4844 0.85 -0.8
214,664 + GFF4844 0.85 -0.8
214,664 + GFF4844 0.85 -0.1
214,664 + GFF4844 0.85 -0.4
214,665 - GFF4844 0.85 +0.5
214,665 - GFF4844 0.85 -1.4
214,665 - GFF4844 0.85 +1.2
214,665 - GFF4844 0.85 +0.1
214,665 - GFF4844 0.85 +1.6
214,665 - GFF4844 0.85 -1.9
214,665 - GFF4844 0.85 +1.3
214,665 - GFF4844 0.85 -0.4
214,665 - GFF4844 0.85 +1.2
214,665 - GFF4844 0.85 -0.4
214,665 - GFF4844 0.85 +1.3
214,665 - GFF4844 0.85 -0.8
214,665 - GFF4844 0.85 -2.7
214,665 - GFF4844 0.85 -0.7
214,665 - GFF4844 0.85 +0.6
214,665 - GFF4844 0.85 -1.2
214,665 - GFF4844 0.85 -0.0
214,665 - GFF4844 0.85 +0.3
214,665 - GFF4844 0.85 +0.4
214,665 - GFF4844 0.85 -0.4
214,665 - GFF4844 0.85 -4.2
214,665 - GFF4844 0.85 -2.1
214,665 - GFF4844 0.85 -2.3
214,665 - GFF4844 0.85 -0.9
214,665 - GFF4844 0.85 +0.2
214,666 + GFF4844 0.85 -2.7
214,666 + GFF4844 0.85 +0.1
214,666 + GFF4844 0.85 +0.4
214,666 + GFF4844 0.85 -2.2
214,666 + GFF4844 0.85 +0.2
214,666 + GFF4844 0.85 -0.9
214,666 + GFF4844 0.85 +0.7
214,667 - GFF4844 0.85 +0.8
214,667 - GFF4844 0.85 -0.6
214,667 - GFF4844 0.85 +0.6
214,823 + -2.1
214,824 - +1.6
214,895 + +1.3
214,896 - -2.7
214,919 + +1.2
214,919 + -1.2
214,920 - -1.4
215,243 + GFF4845 0.47 -0.6
215,243 + GFF4845 0.47 +0.6
215,243 + GFF4845 0.47 +0.6
215,244 - GFF4845 0.47 -0.9
215,244 - GFF4845 0.47 -0.0
215,244 - GFF4845 0.47 -0.4
215,244 - GFF4845 0.47 -1.4
215,273 + GFF4845 0.51 +0.7
215,273 + GFF4845 0.51 -1.6
215,273 + GFF4845 0.51 +1.6
215,273 + GFF4845 0.51 -0.7
215,273 + GFF4845 0.51 -1.8
215,274 - GFF4845 0.51 -0.1
215,274 - GFF4845 0.51 +0.2
215,274 - GFF4845 0.51 -3.7
215,274 - GFF4845 0.51 -1.2
215,286 - GFF4845 0.53 -3.9
215,324 + GFF4845 0.58 -1.4
215,912 - GFF4846 0.11 +0.9
215,912 - GFF4846 0.11 -1.5
215,912 - GFF4846 0.11 -2.6
215,912 - GFF4846 0.11 -1.7
215,912 - GFF4846 0.11 -3.7
215,912 - GFF4846 0.11 -0.7
215,914 + GFF4846 0.11 -0.7
215,981 - GFF4846 0.14 +0.9
215,981 - GFF4846 0.14 +2.0
215,981 - GFF4846 0.14 -2.7
215,981 - GFF4846 0.14 +0.1
215,981 - GFF4846 0.14 -1.0
216,254 - GFF4846 0.25 -0.4
216,254 - GFF4846 0.25 -1.9
216,254 - GFF4846 0.25 +0.5
216,382 + GFF4846 0.30 -0.4
216,382 + GFF4846 0.30 +0.2
216,382 + GFF4846 0.30 -1.9
216,383 - GFF4846 0.30 -1.7
216,383 - GFF4846 0.30 +0.6
216,383 - GFF4846 0.30 +0.1
216,491 + GFF4846 0.34 -1.8
216,492 - GFF4846 0.35 -0.6
216,634 + GFF4846 0.40 -2.8
216,634 + GFF4846 0.40 -1.5
216,634 + GFF4846 0.40 +0.0
216,635 - GFF4846 0.40 -0.4
216,635 - GFF4846 0.40 +3.6
216,635 - GFF4846 0.40 -3.2

Or see this region's nucleotide sequence