Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4824 and GFF4825 are separated by 88 nucleotides GFF4825 and GFF4826 are separated by 154 nucleotides GFF4826 and GFF4827 are separated by 71 nucleotides GFF4827 and GFF4828 are separated by 7 nucleotides GFF4828 and GFF4829 are separated by 73 nucleotides
GFF4824 - Transcriptional regulator, AraC family, at 195,699 to 196,424
GFF4824
GFF4825 - SWIB/MDM2 domain-containing proteins, at 196,513 to 196,968
GFF4825
GFF4826 - Permease of the drug/metabolite transporter (DMT) superfamily, at 197,123 to 198,013
GFF4826
GFF4827 - FIG00348957: hypothetical protein, at 198,085 to 198,501
GFF4827
GFF4828 - no description, at 198,509 to 198,634
GFF4828
GFF4829 - Isocitrate lyase (EC 4.1.3.1), at 198,708 to 200,039
GFF4829
Position (kb) 197
198
199 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 196.347 kb on + strand, within GFF4824 at 196.348 kb on - strand, within GFF4824 at 196.348 kb on - strand, within GFF4824 at 196.348 kb on - strand, within GFF4824 at 196.369 kb on + strand at 196.369 kb on + strand at 196.369 kb on + strand at 196.369 kb on + strand at 196.369 kb on + strand at 196.369 kb on + strand at 196.369 kb on + strand at 196.370 kb on - strand at 196.370 kb on - strand at 196.370 kb on - strand at 196.370 kb on - strand at 196.370 kb on - strand at 196.370 kb on - strand at 196.370 kb on - strand at 196.370 kb on - strand at 196.370 kb on - strand at 196.370 kb on - strand at 196.514 kb on + strand at 196.514 kb on + strand at 196.514 kb on + strand at 196.514 kb on + strand at 196.514 kb on + strand at 196.514 kb on + strand at 196.515 kb on - strand at 196.515 kb on - strand at 196.515 kb on - strand at 196.515 kb on - strand at 196.649 kb on + strand, within GFF4825 at 196.649 kb on + strand, within GFF4825 at 196.649 kb on + strand, within GFF4825 at 196.650 kb on - strand, within GFF4825 at 196.650 kb on - strand, within GFF4825 at 196.650 kb on - strand, within GFF4825 at 196.650 kb on - strand, within GFF4825 at 196.650 kb on - strand, within GFF4825 at 196.650 kb on - strand, within GFF4825 at 196.650 kb on - strand, within GFF4825 at 197.038 kb on + strand at 197.039 kb on - strand at 197.039 kb on - strand at 197.039 kb on - strand at 197.285 kb on + strand, within GFF4826 at 197.285 kb on + strand, within GFF4826 at 197.285 kb on + strand, within GFF4826 at 197.286 kb on - strand, within GFF4826 at 197.286 kb on - strand, within GFF4826 at 197.343 kb on + strand, within GFF4826 at 197.344 kb on - strand, within GFF4826 at 197.509 kb on - strand, within GFF4826 at 197.509 kb on - strand, within GFF4826 at 197.833 kb on + strand, within GFF4826 at 197.833 kb on + strand, within GFF4826 at 197.967 kb on + strand at 197.968 kb on - strand at 198.006 kb on + strand at 198.007 kb on - strand at 198.007 kb on - strand at 198.007 kb on - strand at 198.007 kb on - strand at 198.047 kb on + strand at 198.047 kb on + strand at 198.048 kb on - strand at 198.048 kb on - strand at 198.048 kb on - strand at 198.048 kb on - strand at 198.048 kb on - strand at 198.048 kb on - strand at 198.048 kb on - strand at 198.063 kb on + strand at 198.063 kb on + strand at 198.064 kb on - strand at 198.064 kb on - strand at 198.107 kb on - strand at 198.199 kb on + strand, within GFF4827 at 198.214 kb on + strand, within GFF4827 at 198.214 kb on + strand, within GFF4827 at 198.262 kb on + strand, within GFF4827 at 198.262 kb on + strand, within GFF4827 at 198.262 kb on + strand, within GFF4827 at 198.262 kb on + strand, within GFF4827 at 198.262 kb on + strand, within GFF4827 at 198.262 kb on + strand, within GFF4827 at 198.262 kb on + strand, within GFF4827 at 198.263 kb on - strand, within GFF4827 at 198.263 kb on - strand, within GFF4827 at 198.334 kb on + strand, within GFF4827 at 198.334 kb on + strand, within GFF4827 at 198.334 kb on + strand, within GFF4827 at 198.334 kb on + strand, within GFF4827 at 198.334 kb on + strand, within GFF4827 at 198.334 kb on + strand, within GFF4827 at 198.335 kb on - strand, within GFF4827 at 198.335 kb on - strand, within GFF4827 at 198.335 kb on - strand, within GFF4827 at 198.335 kb on - strand, within GFF4827 at 198.335 kb on - strand, within GFF4827 at 198.335 kb on - strand, within GFF4827 at 198.335 kb on - strand, within GFF4827 at 198.392 kb on - strand, within GFF4827 at 198.507 kb on + strand at 198.508 kb on - strand at 198.551 kb on + strand, within GFF4828 at 198.588 kb on + strand, within GFF4828 at 198.589 kb on - strand, within GFF4828 at 198.625 kb on + strand at 198.635 kb on - strand at 198.653 kb on + strand at 198.653 kb on + strand at 198.654 kb on - strand at 198.658 kb on + strand at 198.658 kb on + strand at 198.658 kb on + strand at 198.658 kb on + strand at 198.924 kb on + strand, within GFF4829 at 198.924 kb on + strand, within GFF4829 at 198.924 kb on + strand, within GFF4829 at 198.925 kb on - strand, within GFF4829 at 198.925 kb on - strand, within GFF4829 at 198.925 kb on - strand, within GFF4829 at 198.996 kb on + strand, within GFF4829 at 198.996 kb on + strand, within GFF4829 at 198.996 kb on + strand, within GFF4829 at 198.997 kb on - strand, within GFF4829 at 198.997 kb on - strand, within GFF4829 at 198.997 kb on - strand, within GFF4829 at 198.997 kb on - strand, within GFF4829 at 198.997 kb on - strand, within GFF4829 at 198.997 kb on - strand, within GFF4829
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 196,347 + GFF4824 0.89 +0.2 196,348 - GFF4824 0.89 -0.4 196,348 - GFF4824 0.89 -2.5 196,348 - GFF4824 0.89 +0.7 196,369 + +0.0 196,369 + +0.6 196,369 + +0.6 196,369 + -3.1 196,369 + +0.3 196,369 + -0.7 196,369 + -1.5 196,370 - +0.6 196,370 - -0.7 196,370 - -1.6 196,370 - -1.1 196,370 - +1.6 196,370 - -0.6 196,370 - -3.1 196,370 - -0.3 196,370 - -2.9 196,370 - -0.9 196,514 + -3.7 196,514 + -3.2 196,514 + -0.7 196,514 + +0.1 196,514 + +0.6 196,514 + +0.1 196,515 - -1.4 196,515 - -1.4 196,515 - +1.0 196,515 - +1.6 196,649 + GFF4825 0.30 -3.8 196,649 + GFF4825 0.30 -3.2 196,649 + GFF4825 0.30 -3.1 196,650 - GFF4825 0.30 -1.5 196,650 - GFF4825 0.30 -1.4 196,650 - GFF4825 0.30 -0.4 196,650 - GFF4825 0.30 -0.4 196,650 - GFF4825 0.30 -0.4 196,650 - GFF4825 0.30 +0.6 196,650 - GFF4825 0.30 -2.2 197,038 + +1.2 197,039 - -1.2 197,039 - -2.5 197,039 - -2.3 197,285 + GFF4826 0.18 -1.7 197,285 + GFF4826 0.18 -2.9 197,285 + GFF4826 0.18 -1.2 197,286 - GFF4826 0.18 -0.2 197,286 - GFF4826 0.18 -1.4 197,343 + GFF4826 0.25 -1.5 197,344 - GFF4826 0.25 -2.2 197,509 - GFF4826 0.43 +0.0 197,509 - GFF4826 0.43 -0.3 197,833 + GFF4826 0.80 +0.1 197,833 + GFF4826 0.80 -0.5 197,967 + +0.1 197,968 - -3.0 198,006 + -0.3 198,007 - +0.2 198,007 - -0.4 198,007 - +0.8 198,007 - +0.1 198,047 + -0.2 198,047 + -1.8 198,048 - +1.9 198,048 - -0.2 198,048 - -0.7 198,048 - -2.8 198,048 - -1.8 198,048 - -0.6 198,048 - -0.4 198,063 + +0.2 198,063 + -2.4 198,064 - -3.2 198,064 - -0.4 198,107 - -0.7 198,199 + GFF4827 0.27 -4.4 198,214 + GFF4827 0.31 -0.0 198,214 + GFF4827 0.31 +0.7 198,262 + GFF4827 0.42 -1.7 198,262 + GFF4827 0.42 -1.2 198,262 + GFF4827 0.42 -0.8 198,262 + GFF4827 0.42 -1.2 198,262 + GFF4827 0.42 -2.8 198,262 + GFF4827 0.42 +0.5 198,262 + GFF4827 0.42 -3.2 198,263 - GFF4827 0.43 -3.0 198,263 - GFF4827 0.43 +1.2 198,334 + GFF4827 0.60 +0.4 198,334 + GFF4827 0.60 -3.2 198,334 + GFF4827 0.60 +2.0 198,334 + GFF4827 0.60 +0.1 198,334 + GFF4827 0.60 +0.4 198,334 + GFF4827 0.60 -0.2 198,335 - GFF4827 0.60 +1.3 198,335 - GFF4827 0.60 -3.3 198,335 - GFF4827 0.60 -0.7 198,335 - GFF4827 0.60 +0.9 198,335 - GFF4827 0.60 +2.9 198,335 - GFF4827 0.60 +0.4 198,335 - GFF4827 0.60 -0.3 198,392 - GFF4827 0.74 -1.4 198,507 + -1.6 198,508 - -1.8 198,551 + GFF4828 0.33 -1.1 198,588 + GFF4828 0.63 +0.4 198,589 - GFF4828 0.63 -0.4 198,625 + -0.8 198,635 - -3.0 198,653 + +0.3 198,653 + -2.3 198,654 - -0.1 198,658 + -1.4 198,658 + +0.8 198,658 + -1.9 198,658 + +0.2 198,924 + GFF4829 0.16 -0.9 198,924 + GFF4829 0.16 -1.7 198,924 + GFF4829 0.16 -3.6 198,925 - GFF4829 0.16 +0.1 198,925 - GFF4829 0.16 -2.5 198,925 - GFF4829 0.16 +0.7 198,996 + GFF4829 0.22 -0.4 198,996 + GFF4829 0.22 +0.1 198,996 + GFF4829 0.22 -0.3 198,997 - GFF4829 0.22 +0.1 198,997 - GFF4829 0.22 +0.1 198,997 - GFF4829 0.22 -3.9 198,997 - GFF4829 0.22 +0.8 198,997 - GFF4829 0.22 -3.3 198,997 - GFF4829 0.22 -2.0
Or see this region's nucleotide sequence