Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4786 and GFF4787 are separated by 13 nucleotides GFF4787 and GFF4788 overlap by 4 nucleotides GFF4788 and GFF4789 are separated by 13 nucleotides
GFF4786 - Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily, at 157,016 to 158,479
GFF4786
GFF4787 - ADP-ribosylglycohydrolase family protein, at 158,493 to 159,389
GFF4787
GFF4788 - Uncharacterized protein COG3236, at 159,386 to 159,949
GFF4788
GFF4789 - FIG01126746: hypothetical protein, at 159,963 to 160,580
GFF4789
Position (kb) 158
159
160 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 157.635 kb on - strand, within GFF4786 at 157.635 kb on - strand, within GFF4786 at 157.635 kb on - strand, within GFF4786 at 157.682 kb on + strand, within GFF4786 at 157.832 kb on + strand, within GFF4786 at 157.833 kb on - strand, within GFF4786 at 157.833 kb on - strand, within GFF4786 at 157.833 kb on - strand, within GFF4786 at 157.958 kb on + strand, within GFF4786 at 157.959 kb on - strand, within GFF4786 at 158.021 kb on + strand, within GFF4786 at 158.021 kb on + strand, within GFF4786 at 158.021 kb on + strand, within GFF4786 at 158.021 kb on + strand, within GFF4786 at 158.022 kb on - strand, within GFF4786 at 158.022 kb on - strand, within GFF4786 at 158.022 kb on - strand, within GFF4786 at 158.022 kb on - strand, within GFF4786 at 158.022 kb on - strand, within GFF4786 at 158.048 kb on + strand, within GFF4786 at 158.210 kb on + strand, within GFF4786 at 158.211 kb on - strand, within GFF4786 at 158.211 kb on - strand, within GFF4786 at 158.301 kb on - strand, within GFF4786 at 158.395 kb on - strand at 158.395 kb on - strand at 158.731 kb on + strand, within GFF4787 at 158.732 kb on - strand, within GFF4787 at 158.771 kb on - strand, within GFF4787 at 158.771 kb on - strand, within GFF4787 at 158.974 kb on + strand, within GFF4787 at 158.975 kb on - strand, within GFF4787 at 158.975 kb on - strand, within GFF4787 at 158.975 kb on - strand, within GFF4787 at 159.130 kb on + strand, within GFF4787 at 159.130 kb on + strand, within GFF4787 at 159.130 kb on + strand, within GFF4787 at 159.130 kb on + strand, within GFF4787 at 159.131 kb on - strand, within GFF4787 at 159.131 kb on - strand, within GFF4787 at 159.154 kb on + strand, within GFF4787 at 159.216 kb on + strand, within GFF4787 at 159.217 kb on - strand, within GFF4787 at 159.217 kb on - strand, within GFF4787 at 159.373 kb on + strand at 159.374 kb on - strand at 159.783 kb on + strand, within GFF4788 at 159.882 kb on + strand, within GFF4788 at 159.882 kb on + strand, within GFF4788 at 160.231 kb on + strand, within GFF4789 at 160.348 kb on + strand, within GFF4789 at 160.348 kb on + strand, within GFF4789 at 160.349 kb on - strand, within GFF4789 at 160.349 kb on - strand, within GFF4789
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 157,635 - GFF4786 0.42 +0.7 157,635 - GFF4786 0.42 -1.0 157,635 - GFF4786 0.42 -0.2 157,682 + GFF4786 0.45 -0.6 157,832 + GFF4786 0.56 -2.6 157,833 - GFF4786 0.56 -3.3 157,833 - GFF4786 0.56 -3.1 157,833 - GFF4786 0.56 -0.9 157,958 + GFF4786 0.64 +0.2 157,959 - GFF4786 0.64 -0.5 158,021 + GFF4786 0.69 -1.4 158,021 + GFF4786 0.69 +0.6 158,021 + GFF4786 0.69 -0.7 158,021 + GFF4786 0.69 +0.9 158,022 - GFF4786 0.69 +1.6 158,022 - GFF4786 0.69 -1.2 158,022 - GFF4786 0.69 -1.7 158,022 - GFF4786 0.69 +0.5 158,022 - GFF4786 0.69 +2.1 158,048 + GFF4786 0.70 -1.5 158,210 + GFF4786 0.82 -1.5 158,211 - GFF4786 0.82 +1.0 158,211 - GFF4786 0.82 +0.0 158,301 - GFF4786 0.88 +1.6 158,395 - -0.6 158,395 - -0.5 158,731 + GFF4787 0.27 -1.6 158,732 - GFF4787 0.27 +0.3 158,771 - GFF4787 0.31 -0.3 158,771 - GFF4787 0.31 -1.4 158,974 + GFF4787 0.54 -2.9 158,975 - GFF4787 0.54 +1.0 158,975 - GFF4787 0.54 -2.8 158,975 - GFF4787 0.54 -2.4 159,130 + GFF4787 0.71 +0.1 159,130 + GFF4787 0.71 -2.0 159,130 + GFF4787 0.71 +1.8 159,130 + GFF4787 0.71 +0.2 159,131 - GFF4787 0.71 +0.5 159,131 - GFF4787 0.71 +3.2 159,154 + GFF4787 0.74 +1.4 159,216 + GFF4787 0.81 +0.4 159,217 - GFF4787 0.81 -3.9 159,217 - GFF4787 0.81 +1.3 159,373 + -3.9 159,374 - -0.9 159,783 + GFF4788 0.70 +1.8 159,882 + GFF4788 0.88 -2.6 159,882 + GFF4788 0.88 -1.7 160,231 + GFF4789 0.43 +0.9 160,348 + GFF4789 0.62 -2.9 160,348 + GFF4789 0.62 -1.4 160,349 - GFF4789 0.62 +1.2 160,349 - GFF4789 0.62 +0.4
Or see this region's nucleotide sequence