Strain Fitness in Variovorax sp. SCN45 around GFF4725

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
85,992	-				-1.8
85,992	-				+0.6
85,992	-				+2.4
86,390	+		GFF4724	0.31	-3.2
86,391	-		GFF4724	0.31	-2.4
86,391	-		GFF4724	0.31	-1.5
86,391	-		GFF4724	0.31	-4.4
86,391	-		GFF4724	0.31	-0.4
86,391	-		GFF4724	0.31	-0.7
86,391	-		GFF4724	0.31	+0.6
86,391	-		GFF4724	0.31	-4.6
86,417	+		GFF4724	0.34	-2.7
86,417	+		GFF4724	0.34	-1.5
86,418	-		GFF4724	0.34	-4.4
86,786	+		GFF4724	0.80	-3.4
86,786	+		GFF4724	0.80	-2.1
86,786	+		GFF4724	0.80	-1.2
86,787	-		GFF4724	0.80	-2.9
87,037	+		GFF4725	0.10	-0.4
87,037	+		GFF4725	0.10	-0.7
87,037	+		GFF4725	0.10	-2.4
87,268	+		GFF4725	0.36	-1.7
87,268	+		GFF4725	0.36	-0.5
87,268	+		GFF4725	0.36	-1.2
87,269	-		GFF4725	0.36	-1.4
87,453	+		GFF4725	0.56	+1.1
87,453	+		GFF4725	0.56	+0.6
87,454	-		GFF4725	0.56	-1.5
87,454	-		GFF4725	0.56	-1.7
87,454	-		GFF4725	0.56	-0.4
87,595	+		GFF4725	0.72	+1.2
87,595	+		GFF4725	0.72	+0.3
87,596	-		GFF4725	0.72	-2.1
87,596	-		GFF4725	0.72	-2.5
87,596	-		GFF4725	0.72	-1.7
87,596	-		GFF4725	0.72	-4.2
87,835	+				-1.4
87,835	+				-0.4
87,835	+				-1.4
87,835	+				-2.6
87,835	+				-0.1
87,836	-				-2.2
87,836	-				-2.2
87,878	+				-3.5
87,879	-				+1.1
87,879	-				-1.0
87,879	-				-0.8
87,879	-				-1.4
87,900	+				+1.3
88,068	+				+1.1
88,069	-				+3.4
88,069	-				+1.6
88,069	-				-0.4
88,072	+				-2.4
88,073	-				+2.2
88,163	+				-2.4
88,164	+				+3.2
88,164	+				+0.2
88,164	+				+0.3
88,165	-				+0.6
88,165	-				+0.2
88,168	+				-0.9
88,168	+				+1.4
88,168	+				-1.0
88,168	+				+2.4
88,168	+				-0.4
88,168	+				-0.4
88,168	+				-2.1
88,169	-				+1.4
88,169	-				-2.7
88,169	-				-0.5
88,169	-				-0.5
88,169	-				-0.7
88,420	+		GFF4726	0.19	-0.2
88,674	+		GFF4726	0.29	-2.6
88,675	-		GFF4726	0.29	+0.1
88,675	-		GFF4726	0.29	+3.4
88,675	-		GFF4726	0.29	+2.6
88,726	-		GFF4726	0.32	+1.5
88,726	-		GFF4726	0.32	+0.3
88,726	-		GFF4726	0.32	-1.4
88,726	-		GFF4726	0.32	+0.8
88,840	-		GFF4726	0.36	-2.4