Strain Fitness in Variovorax sp. SCN45 around GFF4536

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4534 and GFF4535 overlap by 4 nucleotidesGFF4535 and GFF4536 are separated by 18 nucleotidesGFF4536 and GFF4537 overlap by 4 nucleotides GFF4534 - Tetrapartite efflux system, outer membrane factor lipoprotein FusA-like, at 172,449 to 173,927 GFF4534 GFF4535 - Tetrapartite efflux system, membrane fusion component FusE-like, at 173,924 to 174,862 GFF4535 GFF4536 - Tetrapartite efflux system component, FusD-like, at 174,881 to 175,087 GFF4536 GFF4537 - Tetrapartite efflux system, inner membrane component FusBC-like, at 175,084 to 177,216 GFF4537 Position (kb) 174 175 176Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 174.255 kb on + strand, within GFF4535at 174.256 kb on - strand, within GFF4535at 174.256 kb on - strand, within GFF4535at 174.256 kb on - strand, within GFF4535at 174.256 kb on - strand, within GFF4535at 174.267 kb on + strand, within GFF4535at 174.267 kb on + strand, within GFF4535at 174.267 kb on + strand, within GFF4535at 174.267 kb on + strand, within GFF4535at 174.267 kb on + strand, within GFF4535at 174.268 kb on - strand, within GFF4535at 174.318 kb on + strand, within GFF4535at 174.318 kb on + strand, within GFF4535at 174.318 kb on + strand, within GFF4535at 174.318 kb on + strand, within GFF4535at 174.318 kb on + strand, within GFF4535at 174.318 kb on + strand, within GFF4535at 174.318 kb on + strand, within GFF4535at 174.318 kb on + strand, within GFF4535at 174.319 kb on - strand, within GFF4535at 174.319 kb on - strand, within GFF4535at 174.592 kb on - strand, within GFF4535at 174.744 kb on + strand, within GFF4535at 174.744 kb on + strand, within GFF4535at 174.744 kb on + strand, within GFF4535at 174.745 kb on - strand, within GFF4535at 174.745 kb on - strand, within GFF4535at 174.745 kb on - strand, within GFF4535at 174.875 kb on - strandat 174.878 kb on + strandat 174.879 kb on - strandat 174.879 kb on - strandat 174.879 kb on - strandat 174.879 kb on - strandat 174.882 kb on + strandat 174.882 kb on + strandat 174.882 kb on + strandat 174.882 kb on + strandat 174.882 kb on + strandat 174.883 kb on - strandat 174.891 kb on + strandat 174.891 kb on + strandat 174.891 kb on + strandat 174.891 kb on + strandat 174.892 kb on - strandat 174.892 kb on - strandat 174.892 kb on - strandat 174.915 kb on + strand, within GFF4536at 174.916 kb on - strand, within GFF4536at 174.930 kb on + strand, within GFF4536at 174.930 kb on + strand, within GFF4536at 174.930 kb on + strand, within GFF4536at 174.931 kb on - strand, within GFF4536at 174.931 kb on - strand, within GFF4536at 174.931 kb on - strand, within GFF4536at 174.972 kb on + strand, within GFF4536at 174.972 kb on + strand, within GFF4536at 175.056 kb on + strand, within GFF4536at 175.056 kb on + strand, within GFF4536at 175.056 kb on + strand, within GFF4536at 175.056 kb on + strand, within GFF4536at 175.056 kb on + strand, within GFF4536at 175.056 kb on + strand, within GFF4536at 175.056 kb on + strand, within GFF4536at 175.056 kb on + strand, within GFF4536at 175.057 kb on - strand, within GFF4536at 175.057 kb on - strand, within GFF4536at 175.057 kb on - strand, within GFF4536at 175.057 kb on - strand, within GFF4536at 175.057 kb on - strand, within GFF4536at 175.057 kb on - strand, within GFF4536at 175.496 kb on + strand, within GFF4537at 175.496 kb on + strand, within GFF4537at 175.496 kb on + strand, within GFF4537at 175.496 kb on + strand, within GFF4537at 175.496 kb on + strand, within GFF4537at 175.497 kb on - strand, within GFF4537at 175.497 kb on - strand, within GFF4537at 175.497 kb on - strand, within GFF4537at 175.497 kb on - strand, within GFF4537at 175.497 kb on - strand, within GFF4537at 175.497 kb on - strand, within GFF4537at 175.514 kb on + strand, within GFF4537at 175.515 kb on - strand, within GFF4537at 175.515 kb on - strand, within GFF4537at 175.772 kb on + strand, within GFF4537at 175.772 kb on + strand, within GFF4537at 175.772 kb on + strand, within GFF4537at 175.772 kb on + strand, within GFF4537at 175.772 kb on + strand, within GFF4537at 175.773 kb on - strand, within GFF4537at 175.773 kb on - strand, within GFF4537at 175.773 kb on - strand, within GFF4537at 175.773 kb on - strand, within GFF4537at 175.773 kb on - strand, within GFF4537at 175.773 kb on - strand, within GFF4537at 175.856 kb on + strand, within GFF4537at 175.856 kb on + strand, within GFF4537at 175.856 kb on + strand, within GFF4537at 175.856 kb on + strand, within GFF4537at 175.856 kb on + strand, within GFF4537at 175.856 kb on + strand, within GFF4537at 175.856 kb on + strand, within GFF4537at 175.856 kb on + strand, within GFF4537at 175.857 kb on - strand, within GFF4537at 175.857 kb on - strand, within GFF4537at 175.857 kb on - strand, within GFF4537at 175.857 kb on - strand, within GFF4537at 175.857 kb on - strand, within GFF4537at 175.857 kb on - strand, within GFF4537at 175.857 kb on - strand, within GFF4537at 175.876 kb on - strand, within GFF4537at 175.876 kb on - strand, within GFF4537at 175.876 kb on - strand, within GFF4537at 176.066 kb on + strand, within GFF4537at 176.066 kb on + strand, within GFF4537at 176.067 kb on - strand, within GFF4537

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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174,255 + GFF4535 0.35 -0.6
174,256 - GFF4535 0.35 +1.2
174,256 - GFF4535 0.35 +1.9
174,256 - GFF4535 0.35 +1.0
174,256 - GFF4535 0.35 +2.5
174,267 + GFF4535 0.37 -2.3
174,267 + GFF4535 0.37 -2.1
174,267 + GFF4535 0.37 -0.3
174,267 + GFF4535 0.37 +0.5
174,267 + GFF4535 0.37 -0.9
174,268 - GFF4535 0.37 +2.2
174,318 + GFF4535 0.42 +0.7
174,318 + GFF4535 0.42 -1.5
174,318 + GFF4535 0.42 +0.5
174,318 + GFF4535 0.42 +0.6
174,318 + GFF4535 0.42 -0.4
174,318 + GFF4535 0.42 +1.0
174,318 + GFF4535 0.42 -1.4
174,318 + GFF4535 0.42 +1.0
174,319 - GFF4535 0.42 +1.6
174,319 - GFF4535 0.42 -1.0
174,592 - GFF4535 0.71 +1.7
174,744 + GFF4535 0.87 -2.0
174,744 + GFF4535 0.87 +0.5
174,744 + GFF4535 0.87 +1.0
174,745 - GFF4535 0.87 -3.8
174,745 - GFF4535 0.87 -1.7
174,745 - GFF4535 0.87 +0.2
174,875 - -1.4
174,878 + +0.4
174,879 - -0.5
174,879 - +1.0
174,879 - -1.2
174,879 - -0.6
174,882 + -0.1
174,882 + -1.7
174,882 + +0.2
174,882 + +1.1
174,882 + -3.5
174,883 - -0.5
174,891 + -0.4
174,891 + +2.0
174,891 + +0.7
174,891 + +0.3
174,892 - -0.4
174,892 - -2.5
174,892 - -2.5
174,915 + GFF4536 0.16 -0.2
174,916 - GFF4536 0.17 -2.2
174,930 + GFF4536 0.24 -2.7
174,930 + GFF4536 0.24 +1.5
174,930 + GFF4536 0.24 +1.5
174,931 - GFF4536 0.24 +0.2
174,931 - GFF4536 0.24 -3.2
174,931 - GFF4536 0.24 +0.6
174,972 + GFF4536 0.44 +0.7
174,972 + GFF4536 0.44 +0.3
175,056 + GFF4536 0.85 -2.8
175,056 + GFF4536 0.85 -0.5
175,056 + GFF4536 0.85 -0.8
175,056 + GFF4536 0.85 +2.4
175,056 + GFF4536 0.85 -0.4
175,056 + GFF4536 0.85 -3.1
175,056 + GFF4536 0.85 -1.5
175,056 + GFF4536 0.85 -1.1
175,057 - GFF4536 0.85 -0.3
175,057 - GFF4536 0.85 -1.4
175,057 - GFF4536 0.85 -2.1
175,057 - GFF4536 0.85 -0.1
175,057 - GFF4536 0.85 -1.4
175,057 - GFF4536 0.85 +0.3
175,496 + GFF4537 0.19 -0.2
175,496 + GFF4537 0.19 -1.7
175,496 + GFF4537 0.19 +0.7
175,496 + GFF4537 0.19 -3.1
175,496 + GFF4537 0.19 -0.8
175,497 - GFF4537 0.19 -0.5
175,497 - GFF4537 0.19 -1.2
175,497 - GFF4537 0.19 -0.8
175,497 - GFF4537 0.19 -3.4
175,497 - GFF4537 0.19 +1.8
175,497 - GFF4537 0.19 -2.1
175,514 + GFF4537 0.20 -1.7
175,515 - GFF4537 0.20 +1.2
175,515 - GFF4537 0.20 +0.0
175,772 + GFF4537 0.32 -2.2
175,772 + GFF4537 0.32 -1.6
175,772 + GFF4537 0.32 +0.5
175,772 + GFF4537 0.32 +4.0
175,772 + GFF4537 0.32 -2.9
175,773 - GFF4537 0.32 +0.0
175,773 - GFF4537 0.32 -2.1
175,773 - GFF4537 0.32 -0.1
175,773 - GFF4537 0.32 -1.1
175,773 - GFF4537 0.32 -1.1
175,773 - GFF4537 0.32 -4.2
175,856 + GFF4537 0.36 +2.9
175,856 + GFF4537 0.36 -1.0
175,856 + GFF4537 0.36 -1.1
175,856 + GFF4537 0.36 -1.1
175,856 + GFF4537 0.36 -2.2
175,856 + GFF4537 0.36 +0.7
175,856 + GFF4537 0.36 -1.5
175,856 + GFF4537 0.36 +0.0
175,857 - GFF4537 0.36 +0.5
175,857 - GFF4537 0.36 -0.5
175,857 - GFF4537 0.36 +0.2
175,857 - GFF4537 0.36 -2.0
175,857 - GFF4537 0.36 +0.0
175,857 - GFF4537 0.36 -0.8
175,857 - GFF4537 0.36 -1.8
175,876 - GFF4537 0.37 -1.7
175,876 - GFF4537 0.37 +0.7
175,876 - GFF4537 0.37 -1.7
176,066 + GFF4537 0.46 -1.1
176,066 + GFF4537 0.46 -0.8
176,067 - GFF4537 0.46 -0.8

Or see this region's nucleotide sequence