Strain Fitness in Variovorax sp. SCN45 around GFF4413

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
49,542	+		GFF4412	0.54	-1.9
49,542	+		GFF4412	0.54	+0.6
49,542	+		GFF4412	0.54	-0.5
49,542	+		GFF4412	0.54	-0.8
49,542	+		GFF4412	0.54	-1.5
49,542	+		GFF4412	0.54	+0.5
49,543	-		GFF4412	0.54	-0.0
49,543	-		GFF4412	0.54	+0.2
49,543	-		GFF4412	0.54	-1.1
49,543	-		GFF4412	0.54	-1.8
49,549	+		GFF4412	0.54	-0.7
49,549	+		GFF4412	0.54	-4.3
49,549	+		GFF4412	0.54	+0.0
49,549	+		GFF4412	0.54	+1.7
49,549	+		GFF4412	0.54	-1.9
49,549	+		GFF4412	0.54	-1.3
49,549	+		GFF4412	0.54	-1.1
49,550	-		GFF4412	0.54	+1.7
49,550	-		GFF4412	0.54	-2.0
49,550	-		GFF4412	0.54	-1.8
49,550	-		GFF4412	0.54	-1.1
49,550	-		GFF4412	0.54	-0.3
49,550	-		GFF4412	0.54	-1.5
49,550	-		GFF4412	0.54	-0.8
49,550	-		GFF4412	0.54	-0.2
49,747	-		GFF4412	0.64	+0.7
49,800	+		GFF4412	0.67	-2.3
49,800	+		GFF4412	0.67	-1.9
49,800	+		GFF4412	0.67	-2.1
49,801	-		GFF4412	0.67	-0.7
49,801	-		GFF4412	0.67	-0.7
49,801	-		GFF4412	0.67	-2.0
49,801	-		GFF4412	0.67	-1.5
49,801	-		GFF4412	0.67	+0.4
49,801	-		GFF4412	0.67	-1.9
49,929	+		GFF4412	0.73	+0.3
49,929	+		GFF4412	0.73	+0.1
49,929	+		GFF4412	0.73	+0.0
49,929	+		GFF4412	0.73	+1.2
49,929	+		GFF4412	0.73	-3.7
49,929	+		GFF4412	0.73	+0.8
50,026	+		GFF4412	0.78	-1.4
50,026	+		GFF4412	0.78	-1.1
50,026	+		GFF4412	0.78	+0.7
50,026	+		GFF4412	0.78	-1.9
50,026	+		GFF4412	0.78	-2.0
50,026	+		GFF4412	0.78	-1.5
50,026	+		GFF4412	0.78	-1.0
50,026	+		GFF4412	0.78	-0.8
50,026	+		GFF4412	0.78	-0.5
50,026	+		GFF4412	0.78	+2.1
50,026	+		GFF4412	0.78	-1.2
50,027	-		GFF4412	0.78	-1.9
50,027	-		GFF4412	0.78	-3.5
50,027	-		GFF4412	0.78	-2.7
50,027	-		GFF4412	0.78	-0.5
50,027	-		GFF4412	0.78	-2.3
50,027	-		GFF4412	0.78	+0.5
50,027	-		GFF4412	0.78	-0.8
50,027	-		GFF4412	0.78	-2.6
50,027	-		GFF4412	0.78	+1.2
50,091	+		GFF4412	0.81	-1.5
50,091	+		GFF4412	0.81	-2.4
50,091	+		GFF4412	0.81	+0.0
50,092	-		GFF4412	0.81	+1.1
50,092	-		GFF4412	0.81	-1.8
50,092	-		GFF4412	0.81	+0.6
50,092	-		GFF4412	0.81	+2.5
50,094	+		GFF4412	0.81	+0.0
50,094	+		GFF4412	0.81	+1.6
50,094	+		GFF4412	0.81	-2.2
50,094	+		GFF4412	0.81	-1.3
50,166	+		GFF4412	0.85	-2.2
50,166	+		GFF4412	0.85	+0.2
50,167	-		GFF4412	0.85	-3.5
50,167	-		GFF4412	0.85	+0.8
50,311	+				-3.6
50,311	+				-1.0
50,311	+				-2.3
50,311	+				-1.8
50,312	-				+2.5
50,312	-				-1.5
50,312	-				-0.5
50,312	-				+1.5
50,328	+				-0.6
50,328	+				+2.5
50,328	+				-1.3
50,328	+				-2.9
50,328	+				-1.1
50,328	+				+0.0
50,329	-				-2.7
50,329	-				-0.3
50,329	-				-0.5
50,476	+				-0.0
50,476	+				-1.7
50,476	+				+2.0
50,476	+				-1.1
50,476	+				+0.4
50,476	+				+2.8
50,476	+				-0.8
50,476	+				-1.4
50,476	+				-0.1
50,476	+				+0.5
50,476	+				-1.5
50,476	+				+0.4
50,477	-				-0.9
50,477	-				-0.5
50,477	-				-1.8
50,477	-				+0.7
50,477	-				-0.8
50,477	-				-1.9
50,477	-				-2.0
50,477	-				-1.6
50,477	-				+0.8
50,477	-				-0.1
50,477	-				-0.3
50,477	-				-3.4
50,498	+				+0.7
50,499	-				-1.5
50,515	+				-1.2
50,515	+				-1.3
50,686	+		GFF4413	0.44	+1.5
50,686	+		GFF4413	0.44	+0.0
50,686	+		GFF4413	0.44	-0.8
50,687	-		GFF4413	0.44	-0.7
50,687	-		GFF4413	0.44	-0.8
50,687	-		GFF4413	0.44	-3.1
50,687	-		GFF4413	0.44	-1.5
50,738	+		GFF4413	0.55	+0.5
50,741	+		GFF4413	0.55	+1.3
50,741	+		GFF4413	0.55	+1.0
50,741	+		GFF4413	0.55	-2.3
50,742	-		GFF4413	0.56	+1.8
50,742	-		GFF4413	0.56	-2.5
50,742	-		GFF4413	0.56	+0.8
50,742	-		GFF4413	0.56	-2.9
50,742	-		GFF4413	0.56	-0.2
50,742	-		GFF4413	0.56	+1.8
50,742	-		GFF4413	0.56	+0.3
50,742	-		GFF4413	0.56	+0.5
50,742	-		GFF4413	0.56	-0.8
50,742	-		GFF4413	0.56	-1.0
50,742	-		GFF4413	0.56	-0.1
50,742	-		GFF4413	0.56	-1.3
50,874	+		GFF4413	0.83	-2.3
50,874	+		GFF4413	0.83	-2.5
50,874	+		GFF4413	0.83	-3.0
50,874	+		GFF4413	0.83	-2.6
50,874	+		GFF4413	0.83	+1.0
50,874	+		GFF4413	0.83	-1.4
50,874	+		GFF4413	0.83	+2.0
50,874	+		GFF4413	0.83	-1.1
50,874	+		GFF4413	0.83	-1.8
50,875	-		GFF4413	0.83	-1.5
50,875	-		GFF4413	0.83	-0.8
50,875	-		GFF4413	0.83	+1.6
50,875	-		GFF4413	0.83	+0.4
50,875	-		GFF4413	0.83	-0.1
50,875	-		GFF4413	0.83	+2.8
50,875	-		GFF4413	0.83	-2.3
50,875	-		GFF4413	0.83	-2.8
51,069	-		GFF4414	0.11	+2.4
51,337	+		GFF4414	0.36	+0.4
51,337	+		GFF4414	0.36	-0.8
51,338	-		GFF4414	0.36	+2.3
51,338	-		GFF4414	0.36	-2.6
51,338	-		GFF4414	0.36	+1.5
51,474	-		GFF4414	0.49	+0.5
51,474	-		GFF4414	0.49	-0.3
51,474	-		GFF4414	0.49	+2.5
51,474	-		GFF4414	0.49	-2.2
51,889	+		GFF4414	0.88	-0.7