Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4344 and GFF4345 are separated by 24 nucleotides GFF4345 and GFF4346 are separated by 175 nucleotides GFF4346 and GFF4347 are separated by 42 nucleotides GFF4347 and GFF4348 overlap by 1 nucleotides
GFF4344 - acyl-CoA dehydrogenase, putative phosphotransferase, at 267,287 to 268,339
GFF4344
GFF4345 - hypothetical protein, at 268,364 to 269,029
GFF4345
GFF4346 - no description, at 269,205 to 270,071
GFF4346
GFF4347 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 270,114 to 270,986
GFF4347
GFF4348 - hypothetical protein, at 270,986 to 272,101
GFF4348
Position (kb) 269
270
271 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 268.357 kb on - strand at 268.555 kb on - strand, within GFF4345 at 268.710 kb on - strand, within GFF4345 at 268.713 kb on + strand, within GFF4345 at 268.713 kb on + strand, within GFF4345 at 268.806 kb on - strand, within GFF4345 at 269.443 kb on + strand, within GFF4346 at 269.512 kb on - strand, within GFF4346 at 270.059 kb on + strand at 270.276 kb on + strand, within GFF4347 at 270.531 kb on + strand, within GFF4347 at 270.546 kb on - strand, within GFF4347 at 270.751 kb on - strand, within GFF4347 at 270.921 kb on + strand at 270.922 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 268,357 - +1.4 268,555 - GFF4345 0.29 -0.4 268,710 - GFF4345 0.52 -0.4 268,713 + GFF4345 0.52 -0.3 268,713 + GFF4345 0.52 -1.1 268,806 - GFF4345 0.66 +0.6 269,443 + GFF4346 0.27 +0.6 269,512 - GFF4346 0.35 -1.1 270,059 + -0.2 270,276 + GFF4347 0.19 -0.1 270,531 + GFF4347 0.48 -3.1 270,546 - GFF4347 0.49 -2.2 270,751 - GFF4347 0.73 -0.9 270,921 + +0.4 270,922 - -1.8
Or see this region's nucleotide sequence