Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4308 and GFF4309 are separated by 1 nucleotides GFF4309 and GFF4310 overlap by 4 nucleotides
GFF4308 - hypothetical protein, at 228,158 to 229,363
GFF4308
GFF4309 - Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1), at 229,365 to 230,201
GFF4309
GFF4310 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 230,198 to 232,054
GFF4310
Position (kb) 229
230
231 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 228.698 kb on + strand, within GFF4308 at 228.699 kb on - strand, within GFF4308 at 228.704 kb on + strand, within GFF4308 at 228.704 kb on + strand, within GFF4308 at 228.864 kb on + strand, within GFF4308 at 228.864 kb on + strand, within GFF4308 at 228.875 kb on + strand, within GFF4308 at 228.875 kb on + strand, within GFF4308 at 229.022 kb on + strand, within GFF4308 at 229.022 kb on - strand, within GFF4308 at 229.119 kb on - strand, within GFF4308 at 229.304 kb on + strand at 229.304 kb on + strand at 229.305 kb on - strand at 229.305 kb on - strand at 229.310 kb on + strand at 229.311 kb on - strand at 229.867 kb on + strand, within GFF4309 at 229.867 kb on + strand, within GFF4309 at 229.868 kb on - strand, within GFF4309 at 230.016 kb on + strand, within GFF4309 at 230.315 kb on + strand at 230.315 kb on + strand at 230.316 kb on - strand at 230.316 kb on - strand at 231.131 kb on + strand, within GFF4310
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 228,698 + GFF4308 0.45 +1.8 228,699 - GFF4308 0.45 -0.9 228,704 + GFF4308 0.45 -2.3 228,704 + GFF4308 0.45 +1.1 228,864 + GFF4308 0.59 -0.6 228,864 + GFF4308 0.59 -1.1 228,875 + GFF4308 0.59 +0.4 228,875 + GFF4308 0.59 -0.3 229,022 + GFF4308 0.72 +2.5 229,022 - GFF4308 0.72 -0.2 229,119 - GFF4308 0.80 +0.2 229,304 + -0.6 229,304 + +0.6 229,305 - -0.6 229,305 - +2.3 229,310 + -0.7 229,311 - +2.1 229,867 + GFF4309 0.60 -3.7 229,867 + GFF4309 0.60 +2.3 229,868 - GFF4309 0.60 -0.1 230,016 + GFF4309 0.78 -1.0 230,315 + -0.4 230,315 + +0.3 230,316 - +1.5 230,316 - -0.7 231,131 + GFF4310 0.50 +2.1
Or see this region's nucleotide sequence