Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4299 and GFF4300 overlap by 1 nucleotides GFF4300 and GFF4301 are separated by 139 nucleotides
GFF4299 - 3-ketoacyl-CoA thiolase, at 218,005 to 219,210
GFF4299
GFF4300 - Hydroxymethylglutaryl-CoA synthase (EC 2.3.3.10) / conserved protein associated with acetyl-CoA C-acyltransferase, at 219,210 to 220,691
GFF4300
GFF4301 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 220,831 to 221,745
GFF4301
Position (kb) 219
220
221 Strain fitness (log2 ratio) -2
-1
0
1 at 218.580 kb on - strand, within GFF4299 at 218.747 kb on + strand, within GFF4299 at 219.254 kb on + strand at 219.281 kb on - strand at 219.499 kb on + strand, within GFF4300 at 219.500 kb on - strand, within GFF4300 at 219.500 kb on - strand, within GFF4300 at 219.500 kb on - strand, within GFF4300 at 219.718 kb on + strand, within GFF4300 at 219.719 kb on - strand, within GFF4300 at 219.719 kb on - strand, within GFF4300 at 219.719 kb on - strand, within GFF4300 at 220.069 kb on + strand, within GFF4300 at 220.612 kb on - strand at 220.695 kb on + strand at 220.722 kb on + strand at 221.270 kb on - strand, within GFF4301 at 221.594 kb on - strand, within GFF4301
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 218,580 - GFF4299 0.48 -0.4 218,747 + GFF4299 0.62 -0.3 219,254 + +0.7 219,281 - -0.9 219,499 + GFF4300 0.20 +0.9 219,500 - GFF4300 0.20 -1.2 219,500 - GFF4300 0.20 +0.1 219,500 - GFF4300 0.20 -1.1 219,718 + GFF4300 0.34 -0.9 219,719 - GFF4300 0.34 -0.1 219,719 - GFF4300 0.34 -2.1 219,719 - GFF4300 0.34 -1.0 220,069 + GFF4300 0.58 -0.7 220,612 - -1.1 220,695 + +0.3 220,722 + +1.7 221,270 - GFF4301 0.48 +0.5 221,594 - GFF4301 0.83 +0.6
Or see this region's nucleotide sequence