Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4204 and GFF4205 overlap by 4 nucleotides GFF4205 and GFF4206 overlap by 4 nucleotides GFF4206 and GFF4207 are separated by 14 nucleotides GFF4207 and GFF4208 are separated by 41 nucleotides
GFF4204 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 120,506 to 121,264
GFF4204
GFF4205 - hypothetical protein, at 121,261 to 121,641
GFF4205
GFF4206 - gamma-BHC dehydrochlorinase, at 121,638 to 122,183
GFF4206
GFF4207 - hypothetical protein, at 122,198 to 123,457
GFF4207
GFF4208 - BUG/TctC family periplasmic protein, at 123,499 to 124,488
GFF4208
Position (kb) 122
123
124 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 122.046 kb on + strand, within GFF4206 at 122.046 kb on + strand, within GFF4206 at 122.046 kb on + strand, within GFF4206 at 122.046 kb on + strand, within GFF4206 at 122.047 kb on - strand, within GFF4206 at 122.047 kb on - strand, within GFF4206 at 122.152 kb on - strand at 122.152 kb on - strand at 122.152 kb on - strand at 122.657 kb on + strand, within GFF4207 at 122.658 kb on - strand, within GFF4207 at 123.650 kb on + strand, within GFF4208 at 123.651 kb on - strand, within GFF4208 at 123.776 kb on - strand, within GFF4208 at 124.066 kb on + strand, within GFF4208 at 124.067 kb on - strand, within GFF4208 at 124.067 kb on - strand, within GFF4208 at 124.268 kb on - strand, within GFF4208
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 122,046 + GFF4206 0.75 +0.9 122,046 + GFF4206 0.75 +0.5 122,046 + GFF4206 0.75 -0.1 122,046 + GFF4206 0.75 -1.5 122,047 - GFF4206 0.75 +0.4 122,047 - GFF4206 0.75 +0.4 122,152 - +1.6 122,152 - -2.1 122,152 - +0.4 122,657 + GFF4207 0.36 -0.4 122,658 - GFF4207 0.37 -0.6 123,650 + GFF4208 0.15 -4.1 123,651 - GFF4208 0.15 -1.4 123,776 - GFF4208 0.28 -0.0 124,066 + GFF4208 0.57 -1.4 124,067 - GFF4208 0.57 -0.9 124,067 - GFF4208 0.57 +0.9 124,268 - GFF4208 0.78 -2.9
Or see this region's nucleotide sequence