Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4133 and GFF4134 are separated by 46 nucleotides GFF4134 and GFF4135 overlap by 4 nucleotides
GFF4133 - Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase, at 39,604 to 40,788
GFF4133
GFF4134 - Small molecule metabolism, at 40,835 to 41,869
GFF4134
GFF4135 - Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme, at 41,866 to 43,104
GFF4135
Position (kb) 40
41
42 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 40.129 kb on + strand, within GFF4133 at 40.492 kb on + strand, within GFF4133 at 40.816 kb on + strand at 40.816 kb on + strand at 40.817 kb on - strand at 41.001 kb on - strand, within GFF4134 at 41.001 kb on - strand, within GFF4134 at 41.110 kb on + strand, within GFF4134 at 41.198 kb on + strand, within GFF4134 at 41.198 kb on + strand, within GFF4134 at 41.285 kb on + strand, within GFF4134 at 41.381 kb on + strand, within GFF4134 at 41.382 kb on - strand, within GFF4134 at 41.382 kb on - strand, within GFF4134 at 41.433 kb on - strand, within GFF4134 at 41.436 kb on - strand, within GFF4134 at 41.436 kb on - strand, within GFF4134 at 41.456 kb on + strand, within GFF4134 at 41.456 kb on + strand, within GFF4134 at 41.720 kb on + strand, within GFF4134 at 41.721 kb on - strand, within GFF4134 at 41.739 kb on - strand, within GFF4134 at 42.121 kb on + strand, within GFF4135 at 42.122 kb on - strand, within GFF4135 at 42.379 kb on + strand, within GFF4135 at 42.379 kb on + strand, within GFF4135 at 42.379 kb on + strand, within GFF4135 at 42.380 kb on - strand, within GFF4135 at 42.406 kb on + strand, within GFF4135 at 42.406 kb on + strand, within GFF4135 at 42.567 kb on - strand, within GFF4135 at 42.593 kb on - strand, within GFF4135
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 40,129 + GFF4133 0.44 -1.2 40,492 + GFF4133 0.75 -1.2 40,816 + +0.8 40,816 + +0.4 40,817 - +1.1 41,001 - GFF4134 0.16 +0.9 41,001 - GFF4134 0.16 -1.5 41,110 + GFF4134 0.27 +0.3 41,198 + GFF4134 0.35 -0.4 41,198 + GFF4134 0.35 -3.5 41,285 + GFF4134 0.43 +2.4 41,381 + GFF4134 0.53 +1.0 41,382 - GFF4134 0.53 +0.4 41,382 - GFF4134 0.53 -0.6 41,433 - GFF4134 0.58 -1.4 41,436 - GFF4134 0.58 +0.1 41,436 - GFF4134 0.58 -1.5 41,456 + GFF4134 0.60 +0.9 41,456 + GFF4134 0.60 -1.4 41,720 + GFF4134 0.86 +1.9 41,721 - GFF4134 0.86 +1.2 41,739 - GFF4134 0.87 -0.3 42,121 + GFF4135 0.21 +0.0 42,122 - GFF4135 0.21 -1.4 42,379 + GFF4135 0.41 -1.9 42,379 + GFF4135 0.41 -0.4 42,379 + GFF4135 0.41 -1.8 42,380 - GFF4135 0.41 -1.1 42,406 + GFF4135 0.44 -2.1 42,406 + GFF4135 0.44 -1.2 42,567 - GFF4135 0.57 -1.4 42,593 - GFF4135 0.59 -0.1
Or see this region's nucleotide sequence