Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4121 and GFF4122 are separated by 79 nucleotides GFF4122 and GFF4123 are separated by 131 nucleotides GFF4123 and GFF4124 are separated by 696 nucleotides
GFF4121 - no description, at 24,556 to 24,966
GFF4121
GFF4122 - hypothetical protein, at 25,046 to 25,687
GFF4122
GFF4123 - no description, at 25,819 to 26,691
GFF4123
GFF4124 - no description, at 27,388 to 27,582
GFF4124
Position (kb) 25
26
27 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 24.882 kb on - strand, within GFF4121 at 24.893 kb on + strand, within GFF4121 at 24.894 kb on - strand, within GFF4121 at 25.108 kb on + strand at 25.108 kb on + strand at 25.108 kb on + strand at 25.109 kb on - strand at 25.112 kb on + strand, within GFF4122 at 25.113 kb on - strand, within GFF4122 at 25.207 kb on + strand, within GFF4122 at 25.207 kb on + strand, within GFF4122 at 25.220 kb on - strand, within GFF4122 at 25.387 kb on + strand, within GFF4122 at 25.387 kb on + strand, within GFF4122 at 25.387 kb on + strand, within GFF4122 at 25.387 kb on + strand, within GFF4122 at 25.387 kb on + strand, within GFF4122 at 25.387 kb on + strand, within GFF4122 at 25.388 kb on - strand, within GFF4122 at 25.388 kb on - strand, within GFF4122 at 25.486 kb on + strand, within GFF4122 at 25.508 kb on + strand, within GFF4122 at 25.509 kb on - strand, within GFF4122 at 25.509 kb on - strand, within GFF4122 at 25.509 kb on - strand, within GFF4122 at 25.589 kb on + strand, within GFF4122 at 25.589 kb on + strand, within GFF4122 at 25.590 kb on - strand, within GFF4122 at 25.591 kb on + strand, within GFF4122 at 25.725 kb on + strand at 25.725 kb on + strand at 25.725 kb on + strand at 25.726 kb on - strand at 25.757 kb on + strand at 25.757 kb on + strand at 25.757 kb on + strand at 25.864 kb on + strand at 25.970 kb on - strand, within GFF4123 at 26.135 kb on + strand, within GFF4123 at 26.136 kb on - strand, within GFF4123 at 26.136 kb on - strand, within GFF4123 at 26.136 kb on - strand, within GFF4123 at 26.214 kb on - strand, within GFF4123 at 26.388 kb on - strand, within GFF4123 at 26.483 kb on + strand, within GFF4123 at 26.483 kb on + strand, within GFF4123 at 26.484 kb on - strand, within GFF4123 at 26.484 kb on - strand, within GFF4123 at 26.484 kb on - strand, within GFF4123 at 26.484 kb on - strand, within GFF4123 at 26.484 kb on - strand, within GFF4123 at 26.484 kb on - strand, within GFF4123 at 26.484 kb on - strand, within GFF4123 at 26.615 kb on + strand at 26.615 kb on + strand at 26.616 kb on - strand at 26.616 kb on - strand at 26.616 kb on - strand at 26.658 kb on + strand at 26.659 kb on - strand at 26.690 kb on - strand at 26.824 kb on + strand at 26.824 kb on + strand at 26.825 kb on - strand at 26.825 kb on - strand at 26.825 kb on - strand at 26.825 kb on - strand at 26.825 kb on - strand at 26.825 kb on - strand at 26.868 kb on + strand at 26.868 kb on + strand at 26.869 kb on - strand at 26.891 kb on + strand at 27.036 kb on + strand at 27.037 kb on - strand at 27.037 kb on - strand at 27.040 kb on + strand at 27.040 kb on + strand at 27.041 kb on - strand at 27.041 kb on - strand at 27.041 kb on - strand at 27.041 kb on - strand at 27.041 kb on - strand at 27.131 kb on + strand at 27.131 kb on + strand at 27.365 kb on + strand at 27.365 kb on + strand at 27.365 kb on + strand at 27.366 kb on - strand at 27.487 kb on - strand, within GFF4124 at 27.487 kb on - strand, within GFF4124 at 27.487 kb on - strand, within GFF4124 at 27.496 kb on + strand, within GFF4124 at 27.496 kb on + strand, within GFF4124 at 27.497 kb on - strand, within GFF4124 at 27.497 kb on - strand, within GFF4124 at 27.497 kb on - strand, within GFF4124 at 27.542 kb on + strand, within GFF4124 at 27.543 kb on - strand, within GFF4124 at 27.563 kb on + strand at 27.563 kb on + strand at 27.563 kb on + strand at 27.564 kb on - strand at 27.598 kb on - strand at 27.636 kb on + strand at 27.640 kb on - strand at 27.676 kb on + strand at 27.680 kb on + strand at 27.684 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 24,882 - GFF4121 0.79 -0.4 24,893 + GFF4121 0.82 -0.5 24,894 - GFF4121 0.82 -1.4 25,108 + -0.4 25,108 + +0.6 25,108 + +3.2 25,109 - +0.1 25,112 + GFF4122 0.10 +0.9 25,113 - GFF4122 0.10 +0.4 25,207 + GFF4122 0.25 -3.3 25,207 + GFF4122 0.25 +0.4 25,220 - GFF4122 0.27 -1.4 25,387 + GFF4122 0.53 -1.4 25,387 + GFF4122 0.53 +1.1 25,387 + GFF4122 0.53 -0.2 25,387 + GFF4122 0.53 +0.3 25,387 + GFF4122 0.53 -0.8 25,387 + GFF4122 0.53 -1.9 25,388 - GFF4122 0.53 -1.7 25,388 - GFF4122 0.53 -1.1 25,486 + GFF4122 0.69 +2.6 25,508 + GFF4122 0.72 -0.6 25,509 - GFF4122 0.72 -3.6 25,509 - GFF4122 0.72 -3.1 25,509 - GFF4122 0.72 -3.6 25,589 + GFF4122 0.85 +0.9 25,589 + GFF4122 0.85 -0.5 25,590 - GFF4122 0.85 -1.5 25,591 + GFF4122 0.85 -1.4 25,725 + -2.1 25,725 + -0.2 25,725 + -0.5 25,726 - +1.2 25,757 + -0.9 25,757 + -1.2 25,757 + -0.1 25,864 + -2.8 25,970 - GFF4123 0.17 -2.5 26,135 + GFF4123 0.36 -0.5 26,136 - GFF4123 0.36 -1.3 26,136 - GFF4123 0.36 -2.2 26,136 - GFF4123 0.36 -2.6 26,214 - GFF4123 0.45 -0.6 26,388 - GFF4123 0.65 -1.1 26,483 + GFF4123 0.76 -1.8 26,483 + GFF4123 0.76 +0.1 26,484 - GFF4123 0.76 -2.6 26,484 - GFF4123 0.76 +0.5 26,484 - GFF4123 0.76 +1.2 26,484 - GFF4123 0.76 -0.9 26,484 - GFF4123 0.76 -3.4 26,484 - GFF4123 0.76 -0.1 26,484 - GFF4123 0.76 +0.2 26,615 + +0.9 26,615 + -3.1 26,616 - -2.0 26,616 - +1.9 26,616 - -4.1 26,658 + -2.0 26,659 - -1.4 26,690 - -2.0 26,824 + +0.5 26,824 + -1.3 26,825 - +0.0 26,825 - +1.3 26,825 - -0.6 26,825 - +0.6 26,825 - -1.3 26,825 - +0.5 26,868 + -2.5 26,868 + +1.1 26,869 - +0.5 26,891 + -1.4 27,036 + +2.5 27,037 - -1.0 27,037 - -0.4 27,040 + +1.4 27,040 + -2.0 27,041 - -1.4 27,041 - -1.1 27,041 - +0.8 27,041 - -1.1 27,041 - +1.1 27,131 + +0.3 27,131 + -0.2 27,365 + -1.2 27,365 + +2.6 27,365 + -1.7 27,366 - -0.1 27,487 - GFF4124 0.51 -1.2 27,487 - GFF4124 0.51 -0.2 27,487 - GFF4124 0.51 -2.3 27,496 + GFF4124 0.55 -1.6 27,496 + GFF4124 0.55 -0.9 27,497 - GFF4124 0.56 +2.8 27,497 - GFF4124 0.56 -4.7 27,497 - GFF4124 0.56 +0.4 27,542 + GFF4124 0.79 -0.2 27,543 - GFF4124 0.79 -3.3 27,563 + +0.6 27,563 + +1.9 27,563 + -2.0 27,564 - -1.2 27,598 - +0.4 27,636 + -0.5 27,640 - -1.8 27,676 + +0.5 27,680 + -0.4 27,684 + -1.8
Or see this region's nucleotide sequence