Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4095 and GFF4096 are separated by 403 nucleotides GFF4096 and GFF4097 are separated by 3 nucleotides GFF4097 and GFF4098 are separated by 0 nucleotides
GFF4095 - no description, at 306,237 to 306,881
GFF4095
GFF4096 - no description, at 307,285 to 308,307
GFF4096
GFF4097 - hypothetical protein, at 308,311 to 308,937
GFF4097
GFF4098 - hypothetical protein, at 308,938 to 309,126
GFF4098
Position (kb) 307
308
309 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 306.616 kb on + strand, within GFF4095 at 306.616 kb on + strand, within GFF4095 at 306.661 kb on + strand, within GFF4095 at 306.661 kb on + strand, within GFF4095 at 306.662 kb on - strand, within GFF4095 at 306.662 kb on - strand, within GFF4095 at 306.662 kb on - strand, within GFF4095 at 306.662 kb on - strand, within GFF4095 at 306.885 kb on - strand at 306.891 kb on + strand at 306.891 kb on + strand at 306.891 kb on + strand at 306.892 kb on - strand at 306.892 kb on - strand at 306.894 kb on - strand at 306.895 kb on + strand at 306.905 kb on - strand at 306.985 kb on + strand at 306.986 kb on - strand at 306.986 kb on - strand at 306.986 kb on - strand at 306.986 kb on - strand at 306.986 kb on - strand at 307.014 kb on + strand at 307.014 kb on + strand at 307.014 kb on + strand at 307.014 kb on + strand at 307.014 kb on + strand at 307.014 kb on + strand at 307.015 kb on - strand at 307.015 kb on - strand at 307.015 kb on - strand at 307.015 kb on - strand at 307.020 kb on + strand at 307.020 kb on + strand at 307.021 kb on - strand at 307.021 kb on - strand at 307.021 kb on - strand at 307.105 kb on + strand at 307.106 kb on - strand at 307.135 kb on - strand at 307.312 kb on + strand at 307.312 kb on + strand at 307.313 kb on - strand at 307.313 kb on - strand at 307.313 kb on - strand at 307.511 kb on - strand, within GFF4096 at 307.511 kb on - strand, within GFF4096 at 307.511 kb on - strand, within GFF4096 at 307.609 kb on + strand, within GFF4096 at 307.610 kb on - strand, within GFF4096 at 307.610 kb on - strand, within GFF4096 at 307.914 kb on - strand, within GFF4096 at 307.936 kb on + strand, within GFF4096 at 307.936 kb on + strand, within GFF4096 at 307.937 kb on - strand, within GFF4096 at 307.937 kb on - strand, within GFF4096 at 307.937 kb on - strand, within GFF4096 at 307.937 kb on - strand, within GFF4096 at 307.937 kb on - strand, within GFF4096 at 307.937 kb on - strand, within GFF4096 at 308.061 kb on + strand, within GFF4096 at 308.129 kb on - strand, within GFF4096 at 308.129 kb on - strand, within GFF4096 at 308.881 kb on + strand at 308.882 kb on - strand at 308.882 kb on - strand at 309.048 kb on - strand, within GFF4098 at 309.048 kb on - strand, within GFF4098 at 309.048 kb on - strand, within GFF4098 at 309.083 kb on + strand, within GFF4098 at 309.084 kb on - strand, within GFF4098 at 309.256 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 306,616 + GFF4095 0.59 -1.6 306,616 + GFF4095 0.59 -1.2 306,661 + GFF4095 0.66 -0.8 306,661 + GFF4095 0.66 +2.1 306,662 - GFF4095 0.66 +0.2 306,662 - GFF4095 0.66 -0.8 306,662 - GFF4095 0.66 +2.4 306,662 - GFF4095 0.66 -2.9 306,885 - -0.5 306,891 + -1.2 306,891 + -2.2 306,891 + -1.0 306,892 - +3.0 306,892 - -1.3 306,894 - -0.1 306,895 + -0.6 306,905 - -2.0 306,985 + +1.8 306,986 - -1.3 306,986 - -2.2 306,986 - -0.2 306,986 - +0.9 306,986 - -0.3 307,014 + +0.8 307,014 + +1.0 307,014 + -0.6 307,014 + -0.6 307,014 + -1.2 307,014 + -3.3 307,015 - -0.0 307,015 - -0.6 307,015 - +0.6 307,015 - +2.0 307,020 + +0.2 307,020 + -1.6 307,021 - +1.6 307,021 - -0.8 307,021 - -1.7 307,105 + -2.4 307,106 - +2.0 307,135 - +1.0 307,312 + +1.2 307,312 + -0.0 307,313 - +2.3 307,313 - -1.5 307,313 - -0.8 307,511 - GFF4096 0.22 -0.2 307,511 - GFF4096 0.22 +1.0 307,511 - GFF4096 0.22 -0.3 307,609 + GFF4096 0.32 +0.3 307,610 - GFF4096 0.32 -2.0 307,610 - GFF4096 0.32 -1.6 307,914 - GFF4096 0.61 -0.0 307,936 + GFF4096 0.64 -1.5 307,936 + GFF4096 0.64 +0.7 307,937 - GFF4096 0.64 -1.3 307,937 - GFF4096 0.64 -0.0 307,937 - GFF4096 0.64 +0.3 307,937 - GFF4096 0.64 +1.5 307,937 - GFF4096 0.64 +2.2 307,937 - GFF4096 0.64 -0.0 308,061 + GFF4096 0.76 +0.4 308,129 - GFF4096 0.83 +0.4 308,129 - GFF4096 0.83 +0.5 308,881 + -0.3 308,882 - +2.4 308,882 - +1.6 309,048 - GFF4098 0.58 -0.3 309,048 - GFF4098 0.58 +4.6 309,048 - GFF4098 0.58 +0.9 309,083 + GFF4098 0.77 +1.9 309,084 - GFF4098 0.77 -0.8 309,256 + -4.0
Or see this region's nucleotide sequence