Strain Fitness in Variovorax sp. SCN45 around GFF4074

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4073 and GFF4074 are separated by 35 nucleotidesGFF4074 and GFF4075 are separated by 46 nucleotidesGFF4075 and GFF4076 are separated by 75 nucleotides GFF4073 - Copper tolerance protein, at 286,690 to 288,114 GFF4073 GFF4074 - Multicopper oxidase, at 288,150 to 289,565 GFF4074 GFF4075 - Copper tolerance protein, at 289,612 to 290,103 GFF4075 GFF4076 - hypothetical protein, at 290,179 to 290,553 GFF4076 Position (kb) 288 289 290Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 287.230 kb on + strand, within GFF4073at 287.230 kb on + strand, within GFF4073at 287.231 kb on - strand, within GFF4073at 287.812 kb on + strand, within GFF4073at 288.309 kb on + strand, within GFF4074at 288.660 kb on + strand, within GFF4074at 288.661 kb on - strand, within GFF4074at 289.026 kb on + strand, within GFF4074at 289.026 kb on + strand, within GFF4074at 289.218 kb on + strand, within GFF4074at 289.218 kb on + strand, within GFF4074at 289.219 kb on - strand, within GFF4074at 289.219 kb on - strand, within GFF4074at 289.219 kb on - strand, within GFF4074at 289.219 kb on - strand, within GFF4074at 289.383 kb on + strand, within GFF4074at 289.525 kb on + strandat 289.526 kb on - strandat 289.913 kb on - strand, within GFF4075

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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287,230 + GFF4073 0.38 +2.0
287,230 + GFF4073 0.38 -1.7
287,231 - GFF4073 0.38 -0.5
287,812 + GFF4073 0.79 +2.4
288,309 + GFF4074 0.11 -1.2
288,660 + GFF4074 0.36 +0.2
288,661 - GFF4074 0.36 -0.5
289,026 + GFF4074 0.62 -2.9
289,026 + GFF4074 0.62 +1.6
289,218 + GFF4074 0.75 -1.5
289,218 + GFF4074 0.75 -2.6
289,219 - GFF4074 0.75 +0.7
289,219 - GFF4074 0.75 +0.8
289,219 - GFF4074 0.75 +2.2
289,219 - GFF4074 0.75 +1.1
289,383 + GFF4074 0.87 -2.4
289,525 + -1.4
289,526 - +0.4
289,913 - GFF4075 0.61 +1.1

Or see this region's nucleotide sequence