Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4061 and GFF4062 are separated by 275 nucleotides GFF4062 and GFF4063 are separated by 12 nucleotides GFF4063 and GFF4064 are separated by 202 nucleotides
GFF4061 - Multicopper oxidase, at 275,243 to 277,054
GFF4061
GFF4062 - Copper resistance protein B, at 277,330 to 278,247
GFF4062
GFF4063 - Cytochrome c family protein, at 278,260 to 278,799
GFF4063
GFF4064 - no description, at 279,002 to 279,340
GFF4064
Position (kb) 277
278
279 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 276.620 kb on - strand, within GFF4061 at 276.649 kb on - strand, within GFF4061 at 276.656 kb on + strand, within GFF4061 at 276.656 kb on + strand, within GFF4061 at 276.656 kb on + strand, within GFF4061 at 276.656 kb on + strand, within GFF4061 at 277.010 kb on + strand at 277.041 kb on + strand at 277.492 kb on - strand, within GFF4062 at 277.565 kb on - strand, within GFF4062 at 277.565 kb on - strand, within GFF4062 at 277.654 kb on + strand, within GFF4062 at 277.717 kb on + strand, within GFF4062 at 277.718 kb on - strand, within GFF4062 at 277.933 kb on + strand, within GFF4062 at 277.934 kb on - strand, within GFF4062 at 277.934 kb on - strand, within GFF4062 at 277.934 kb on - strand, within GFF4062 at 277.934 kb on - strand, within GFF4062 at 278.029 kb on - strand, within GFF4062 at 278.035 kb on + strand, within GFF4062 at 278.035 kb on + strand, within GFF4062 at 278.135 kb on - strand, within GFF4062 at 278.135 kb on - strand, within GFF4062 at 278.180 kb on - strand at 278.180 kb on - strand at 278.353 kb on + strand, within GFF4063 at 278.353 kb on + strand, within GFF4063 at 278.354 kb on - strand, within GFF4063 at 278.501 kb on - strand, within GFF4063 at 278.843 kb on + strand at 278.876 kb on + strand at 278.876 kb on + strand at 278.876 kb on + strand at 278.877 kb on - strand at 278.877 kb on - strand at 278.913 kb on - strand at 278.917 kb on + strand at 278.917 kb on + strand at 278.918 kb on - strand at 278.918 kb on - strand at 278.918 kb on - strand at 278.943 kb on - strand at 278.943 kb on - strand at 278.964 kb on - strand at 279.056 kb on + strand, within GFF4064
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 276,620 - GFF4061 0.76 -1.0 276,649 - GFF4061 0.78 +2.5 276,656 + GFF4061 0.78 -0.8 276,656 + GFF4061 0.78 -0.4 276,656 + GFF4061 0.78 +0.8 276,656 + GFF4061 0.78 -0.0 277,010 + +1.4 277,041 + -1.9 277,492 - GFF4062 0.18 -1.5 277,565 - GFF4062 0.26 -0.6 277,565 - GFF4062 0.26 -3.0 277,654 + GFF4062 0.35 -0.6 277,717 + GFF4062 0.42 +2.0 277,718 - GFF4062 0.42 -0.8 277,933 + GFF4062 0.66 -1.6 277,934 - GFF4062 0.66 -1.5 277,934 - GFF4062 0.66 +1.8 277,934 - GFF4062 0.66 +1.0 277,934 - GFF4062 0.66 -1.9 278,029 - GFF4062 0.76 +0.7 278,035 + GFF4062 0.77 -0.8 278,035 + GFF4062 0.77 +1.2 278,135 - GFF4062 0.88 -3.7 278,135 - GFF4062 0.88 -2.3 278,180 - +2.0 278,180 - -2.5 278,353 + GFF4063 0.17 -1.2 278,353 + GFF4063 0.17 -0.5 278,354 - GFF4063 0.17 +1.0 278,501 - GFF4063 0.45 +1.6 278,843 + -1.3 278,876 + -1.9 278,876 + -0.6 278,876 + -1.2 278,877 - +0.8 278,877 - -1.6 278,913 - +0.3 278,917 + -2.3 278,917 + +0.8 278,918 - -2.5 278,918 - -1.8 278,918 - -2.3 278,943 - +0.5 278,943 - +3.0 278,964 - +0.6 279,056 + GFF4064 0.16 -0.4
Or see this region's nucleotide sequence