Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4046 and GFF4047 are separated by 12 nucleotides GFF4047 and GFF4048 are separated by 9 nucleotides
GFF4046 - Cobalt/zinc/cadmium efflux RND transporter, transmembrane protein CzcA, at 256,940 to 260,188
GFF4046
GFF4047 - Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein CzcB, at 260,201 to 261,796
GFF4047
GFF4048 - Cobalt/zinc/cadmium efflux RND transporter, outer membrane protein CzcC, at 261,806 to 262,894
GFF4048
Position (kb) 260
261
262 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 259.210 kb on + strand, within GFF4046 at 259.211 kb on - strand, within GFF4046 at 259.573 kb on - strand, within GFF4046 at 259.609 kb on - strand, within GFF4046 at 259.620 kb on + strand, within GFF4046 at 259.770 kb on + strand, within GFF4046 at 259.803 kb on - strand, within GFF4046 at 259.879 kb on - strand at 260.023 kb on - strand at 260.039 kb on - strand at 260.062 kb on + strand at 260.062 kb on + strand at 260.098 kb on - strand at 260.103 kb on + strand at 260.103 kb on + strand at 260.103 kb on + strand at 260.103 kb on + strand at 260.210 kb on - strand at 260.268 kb on + strand at 260.269 kb on - strand at 260.522 kb on - strand, within GFF4047 at 260.931 kb on + strand, within GFF4047 at 260.932 kb on - strand, within GFF4047 at 260.932 kb on - strand, within GFF4047 at 261.021 kb on - strand, within GFF4047 at 261.021 kb on - strand, within GFF4047 at 261.252 kb on + strand, within GFF4047 at 261.395 kb on + strand, within GFF4047 at 261.435 kb on + strand, within GFF4047 at 261.436 kb on - strand, within GFF4047 at 261.906 kb on + strand at 261.923 kb on + strand, within GFF4048 at 261.923 kb on + strand, within GFF4048 at 261.924 kb on - strand, within GFF4048 at 261.924 kb on - strand, within GFF4048 at 261.931 kb on + strand, within GFF4048 at 261.931 kb on + strand, within GFF4048 at 261.932 kb on - strand, within GFF4048 at 261.957 kb on + strand, within GFF4048 at 261.958 kb on - strand, within GFF4048 at 262.065 kb on + strand, within GFF4048 at 262.066 kb on - strand, within GFF4048 at 262.066 kb on - strand, within GFF4048 at 262.086 kb on - strand, within GFF4048 at 262.319 kb on + strand, within GFF4048 at 262.600 kb on + strand, within GFF4048 at 262.699 kb on - strand, within GFF4048 at 262.699 kb on - strand, within GFF4048 at 262.754 kb on - strand, within GFF4048 at 262.754 kb on - strand, within GFF4048 at 262.754 kb on - strand, within GFF4048
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 259,210 + GFF4046 0.70 +1.0 259,211 - GFF4046 0.70 +0.9 259,573 - GFF4046 0.81 -0.3 259,609 - GFF4046 0.82 -0.0 259,620 + GFF4046 0.82 -1.3 259,770 + GFF4046 0.87 +1.0 259,803 - GFF4046 0.88 -2.9 259,879 - -0.3 260,023 - -2.6 260,039 - +0.9 260,062 + -1.3 260,062 + +0.2 260,098 - -0.9 260,103 + +0.6 260,103 + +0.6 260,103 + +0.1 260,103 + -0.2 260,210 - -1.1 260,268 + -1.5 260,269 - -1.0 260,522 - GFF4047 0.20 +1.4 260,931 + GFF4047 0.46 -1.4 260,932 - GFF4047 0.46 -0.7 260,932 - GFF4047 0.46 -1.7 261,021 - GFF4047 0.51 -1.1 261,021 - GFF4047 0.51 -1.6 261,252 + GFF4047 0.66 +1.6 261,395 + GFF4047 0.75 -0.5 261,435 + GFF4047 0.77 -1.2 261,436 - GFF4047 0.77 -0.6 261,906 + -2.3 261,923 + GFF4048 0.11 +2.6 261,923 + GFF4048 0.11 -0.3 261,924 - GFF4048 0.11 -3.1 261,924 - GFF4048 0.11 +0.1 261,931 + GFF4048 0.11 -2.8 261,931 + GFF4048 0.11 +6.4 261,932 - GFF4048 0.12 -0.9 261,957 + GFF4048 0.14 -0.3 261,958 - GFF4048 0.14 +1.0 262,065 + GFF4048 0.24 +1.8 262,066 - GFF4048 0.24 +0.8 262,066 - GFF4048 0.24 -0.0 262,086 - GFF4048 0.26 -1.5 262,319 + GFF4048 0.47 +1.0 262,600 + GFF4048 0.73 -0.3 262,699 - GFF4048 0.82 -2.0 262,699 - GFF4048 0.82 +1.2 262,754 - GFF4048 0.87 -2.4 262,754 - GFF4048 0.87 -0.8 262,754 - GFF4048 0.87 -1.1
Or see this region's nucleotide sequence