Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4016 and GFF4017 overlap by 8 nucleotides GFF4017 and GFF4018 overlap by 4 nucleotides GFF4018 and GFF4019 are separated by 4 nucleotides GFF4019 and GFF4020 overlap by 11 nucleotides GFF4020 and GFF4021 are separated by 16 nucleotides
GFF4016 - Arsenate reductase (EC 1.20.4.1), at 225,986 to 226,357
GFF4016
GFF4017 - Arsenate reductase (EC 1.20.4.4) thioredoxin-coupled, LMWP family, at 226,350 to 226,859
GFF4017
GFF4018 - Arsenate reductase (EC 1.20.4.4) thioredoxin-coupled, LMWP family, at 226,856 to 227,344
GFF4018
GFF4019 - Arsenical-resistance protein ACR3, at 227,349 to 228,407
GFF4019
GFF4020 - Arsenic resistance protein ArsH, at 228,397 to 229,110
GFF4020
GFF4021 - Uncharacterized MFS-type transporter, at 229,127 to 230,326
GFF4021
Position (kb) 227
228
229 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 226.423 kb on + strand, within GFF4017 at 226.423 kb on + strand, within GFF4017 at 226.423 kb on + strand, within GFF4017 at 226.424 kb on - strand, within GFF4017 at 226.424 kb on - strand, within GFF4017 at 226.424 kb on - strand, within GFF4017 at 226.458 kb on + strand, within GFF4017 at 226.458 kb on + strand, within GFF4017 at 226.458 kb on + strand, within GFF4017 at 226.458 kb on + strand, within GFF4017 at 226.458 kb on + strand, within GFF4017 at 226.459 kb on - strand, within GFF4017 at 226.459 kb on - strand, within GFF4017 at 226.497 kb on + strand, within GFF4017 at 226.497 kb on + strand, within GFF4017 at 226.498 kb on - strand, within GFF4017 at 226.716 kb on - strand, within GFF4017 at 226.869 kb on + strand at 226.869 kb on + strand at 226.869 kb on + strand at 226.869 kb on + strand at 226.869 kb on + strand at 226.869 kb on + strand at 226.869 kb on + strand at 226.869 kb on + strand at 226.870 kb on - strand at 226.870 kb on - strand at 226.870 kb on - strand at 226.870 kb on - strand at 226.870 kb on - strand at 227.138 kb on + strand, within GFF4018 at 227.138 kb on + strand, within GFF4018 at 227.252 kb on + strand, within GFF4018 at 227.410 kb on - strand at 227.730 kb on + strand, within GFF4019 at 227.730 kb on + strand, within GFF4019 at 227.730 kb on + strand, within GFF4019 at 227.730 kb on + strand, within GFF4019 at 227.730 kb on + strand, within GFF4019 at 227.730 kb on + strand, within GFF4019 at 227.946 kb on + strand, within GFF4019 at 227.947 kb on - strand, within GFF4019 at 227.947 kb on - strand, within GFF4019 at 228.396 kb on + strand at 228.397 kb on - strand at 228.397 kb on - strand at 228.505 kb on + strand, within GFF4020 at 228.505 kb on + strand, within GFF4020 at 228.529 kb on + strand, within GFF4020 at 228.962 kb on - strand, within GFF4020 at 228.964 kb on + strand, within GFF4020 at 228.965 kb on - strand, within GFF4020 at 228.965 kb on - strand, within GFF4020 at 229.049 kb on - strand at 229.049 kb on - strand at 229.049 kb on - strand at 229.193 kb on + strand at 229.193 kb on + strand at 229.193 kb on + strand at 229.194 kb on - strand at 229.194 kb on - strand at 229.194 kb on - strand at 229.194 kb on - strand at 229.196 kb on + strand at 229.196 kb on + strand at 229.196 kb on + strand at 229.196 kb on + strand at 229.197 kb on - strand at 229.352 kb on - strand, within GFF4021
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 226,423 + GFF4017 0.14 -3.5 226,423 + GFF4017 0.14 -3.4 226,423 + GFF4017 0.14 -1.5 226,424 - GFF4017 0.15 -2.7 226,424 - GFF4017 0.15 -2.9 226,424 - GFF4017 0.15 -3.0 226,458 + GFF4017 0.21 +0.8 226,458 + GFF4017 0.21 -0.2 226,458 + GFF4017 0.21 +0.7 226,458 + GFF4017 0.21 +2.0 226,458 + GFF4017 0.21 +1.7 226,459 - GFF4017 0.21 +2.2 226,459 - GFF4017 0.21 +2.3 226,497 + GFF4017 0.29 -2.4 226,497 + GFF4017 0.29 +0.2 226,498 - GFF4017 0.29 -0.0 226,716 - GFF4017 0.72 +1.4 226,869 + -1.2 226,869 + +1.1 226,869 + +0.5 226,869 + -1.9 226,869 + +2.0 226,869 + -1.0 226,869 + +0.8 226,869 + -2.5 226,870 - -0.8 226,870 - -2.5 226,870 - -1.2 226,870 - -2.3 226,870 - +0.6 227,138 + GFF4018 0.58 +1.6 227,138 + GFF4018 0.58 +0.2 227,252 + GFF4018 0.81 +1.0 227,410 - -1.3 227,730 + GFF4019 0.36 -3.0 227,730 + GFF4019 0.36 -0.8 227,730 + GFF4019 0.36 -0.3 227,730 + GFF4019 0.36 +2.2 227,730 + GFF4019 0.36 +0.8 227,730 + GFF4019 0.36 -0.7 227,946 + GFF4019 0.56 +1.0 227,947 - GFF4019 0.56 +0.9 227,947 - GFF4019 0.56 +0.4 228,396 + +0.4 228,397 - +1.1 228,397 - -2.8 228,505 + GFF4020 0.15 -0.3 228,505 + GFF4020 0.15 -1.6 228,529 + GFF4020 0.18 +0.2 228,962 - GFF4020 0.79 +0.1 228,964 + GFF4020 0.79 -0.6 228,965 - GFF4020 0.80 -0.4 228,965 - GFF4020 0.80 -1.3 229,049 - -1.3 229,049 - -0.8 229,049 - +1.0 229,193 + +1.7 229,193 + -2.2 229,193 + -0.3 229,194 - +0.7 229,194 - -0.5 229,194 - -1.0 229,194 - -1.9 229,196 + +2.0 229,196 + -0.6 229,196 + -1.5 229,196 + -0.0 229,197 - +2.0 229,352 - GFF4021 0.19 +0.8
Or see this region's nucleotide sequence