Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3969 and GFF3970 are separated by 20 nucleotides GFF3970 and GFF3971 overlap by 1 nucleotides GFF3971 and GFF3972 are separated by 14 nucleotides
GFF3969 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 171,688 to 172,680
GFF3969
GFF3970 - Ring hydroxylating dioxygenase, alpha subunit (EC 1.14.12.13), at 172,701 to 174,014
GFF3970
GFF3971 - Aromatic-ring-hydroxylating dioxygenase, beta subunit (EC 1.14.12.3), at 174,014 to 174,505
GFF3971
GFF3972 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 174,520 to 176,148
GFF3972
Position (kb) 172
173
174
175 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 171.919 kb on + strand, within GFF3969 at 171.919 kb on + strand, within GFF3969 at 172.294 kb on + strand, within GFF3969 at 172.634 kb on + strand at 172.634 kb on + strand at 172.635 kb on - strand at 172.710 kb on + strand at 172.773 kb on + strand at 172.774 kb on - strand at 173.082 kb on + strand, within GFF3970 at 173.206 kb on - strand, within GFF3970 at 173.547 kb on + strand, within GFF3970 at 173.547 kb on + strand, within GFF3970 at 173.548 kb on - strand, within GFF3970 at 173.548 kb on - strand, within GFF3970 at 173.784 kb on + strand, within GFF3970 at 173.784 kb on + strand, within GFF3970 at 173.784 kb on + strand, within GFF3970 at 173.784 kb on + strand, within GFF3970 at 173.785 kb on - strand, within GFF3970 at 174.387 kb on - strand, within GFF3971 at 174.700 kb on + strand, within GFF3972
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 171,919 + GFF3969 0.23 -0.3 171,919 + GFF3969 0.23 -3.7 172,294 + GFF3969 0.61 -1.4 172,634 + -1.2 172,634 + +2.4 172,635 - -0.2 172,710 + +0.9 172,773 + -0.8 172,774 - -1.9 173,082 + GFF3970 0.29 -0.1 173,206 - GFF3970 0.38 +1.0 173,547 + GFF3970 0.64 -2.1 173,547 + GFF3970 0.64 +0.1 173,548 - GFF3970 0.64 -1.0 173,548 - GFF3970 0.64 -0.3 173,784 + GFF3970 0.82 +0.7 173,784 + GFF3970 0.82 -2.7 173,784 + GFF3970 0.82 +2.9 173,784 + GFF3970 0.82 +2.1 173,785 - GFF3970 0.82 -0.4 174,387 - GFF3971 0.76 +3.4 174,700 + GFF3972 0.11 +0.4
Or see this region's nucleotide sequence