Strain Fitness in Variovorax sp. SCN45 around GFF3921

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3920 and GFF3921 are separated by 100 nucleotidesGFF3921 and GFF3922 overlap by 4 nucleotides GFF3920 - FIG00467295: hypothetical protein, at 125,879 to 127,129 GFF3920 GFF3921 - Tryptophan 2,3-dioxygenase (EC 1.13.11.11), at 127,230 to 128,090 GFF3921 GFF3922 - Kynureninase (EC 3.7.1.3), at 128,087 to 129,364 GFF3922 Position (kb) 127 128 129Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 126.421 kb on + strand, within GFF3920at 126.422 kb on - strand, within GFF3920at 126.447 kb on + strand, within GFF3920at 126.447 kb on + strand, within GFF3920at 126.447 kb on + strand, within GFF3920at 126.448 kb on - strand, within GFF3920at 126.448 kb on - strand, within GFF3920at 126.448 kb on - strand, within GFF3920at 126.448 kb on - strand, within GFF3920at 126.448 kb on - strand, within GFF3920at 126.448 kb on - strand, within GFF3920at 126.513 kb on + strand, within GFF3920at 126.513 kb on + strand, within GFF3920at 126.514 kb on - strand, within GFF3920at 126.514 kb on - strand, within GFF3920at 126.540 kb on + strand, within GFF3920at 126.541 kb on - strand, within GFF3920at 126.541 kb on - strand, within GFF3920at 126.717 kb on + strand, within GFF3920at 126.717 kb on + strand, within GFF3920at 126.717 kb on + strand, within GFF3920at 126.718 kb on - strand, within GFF3920at 126.718 kb on - strand, within GFF3920at 126.718 kb on - strand, within GFF3920at 126.733 kb on - strand, within GFF3920at 126.733 kb on - strand, within GFF3920at 126.849 kb on + strand, within GFF3920at 126.849 kb on + strand, within GFF3920at 126.849 kb on + strand, within GFF3920at 126.849 kb on + strand, within GFF3920at 126.849 kb on + strand, within GFF3920at 126.849 kb on + strand, within GFF3920at 126.849 kb on + strand, within GFF3920at 126.850 kb on - strand, within GFF3920at 126.850 kb on - strand, within GFF3920at 126.850 kb on - strand, within GFF3920at 126.850 kb on - strand, within GFF3920at 126.850 kb on - strand, within GFF3920at 126.850 kb on - strand, within GFF3920at 126.850 kb on - strand, within GFF3920at 126.850 kb on - strand, within GFF3920at 126.850 kb on - strand, within GFF3920at 126.850 kb on - strand, within GFF3920at 126.850 kb on - strand, within GFF3920at 126.850 kb on - strand, within GFF3920at 126.927 kb on + strand, within GFF3920at 126.927 kb on + strand, within GFF3920at 126.927 kb on + strand, within GFF3920at 126.928 kb on - strand, within GFF3920at 126.928 kb on - strand, within GFF3920at 126.928 kb on - strand, within GFF3920at 127.160 kb on - strandat 127.232 kb on - strandat 127.294 kb on + strandat 127.294 kb on + strandat 127.294 kb on + strandat 127.295 kb on - strandat 127.295 kb on - strandat 127.295 kb on - strandat 127.295 kb on - strandat 127.295 kb on - strandat 127.295 kb on - strandat 127.295 kb on - strandat 127.420 kb on + strand, within GFF3921at 127.420 kb on + strand, within GFF3921at 127.420 kb on + strand, within GFF3921at 127.421 kb on - strand, within GFF3921at 127.451 kb on - strand, within GFF3921at 127.452 kb on + strand, within GFF3921at 127.452 kb on + strand, within GFF3921at 127.452 kb on + strand, within GFF3921at 127.452 kb on + strand, within GFF3921at 127.453 kb on - strand, within GFF3921at 127.453 kb on - strand, within GFF3921at 127.492 kb on + strand, within GFF3921at 127.493 kb on - strand, within GFF3921at 127.591 kb on + strand, within GFF3921at 127.724 kb on - strand, within GFF3921at 127.724 kb on - strand, within GFF3921at 127.724 kb on - strand, within GFF3921at 127.741 kb on + strand, within GFF3921at 127.741 kb on + strand, within GFF3921at 127.742 kb on - strand, within GFF3921at 127.994 kb on - strand, within GFF3921at 127.994 kb on - strand, within GFF3921at 128.002 kb on + strand, within GFF3921at 128.002 kb on + strand, within GFF3921at 128.002 kb on + strand, within GFF3921at 128.002 kb on + strand, within GFF3921at 128.003 kb on - strand, within GFF3921at 128.003 kb on - strand, within GFF3921at 128.003 kb on - strand, within GFF3921at 128.003 kb on - strand, within GFF3921at 128.003 kb on - strand, within GFF3921at 128.162 kb on + strandat 128.163 kb on - strandat 128.163 kb on - strandat 128.193 kb on + strandat 128.193 kb on + strandat 128.193 kb on + strandat 128.193 kb on + strandat 128.193 kb on + strandat 128.193 kb on + strandat 128.193 kb on + strandat 128.194 kb on - strandat 128.194 kb on - strandat 128.194 kb on - strandat 128.194 kb on - strandat 128.250 kb on + strand, within GFF3922at 128.295 kb on + strand, within GFF3922at 128.295 kb on + strand, within GFF3922at 128.296 kb on - strand, within GFF3922at 128.296 kb on - strand, within GFF3922at 128.321 kb on + strand, within GFF3922at 128.322 kb on - strand, within GFF3922at 128.322 kb on - strand, within GFF3922at 128.322 kb on - strand, within GFF3922at 128.322 kb on - strand, within GFF3922at 128.547 kb on + strand, within GFF3922at 128.548 kb on - strand, within GFF3922at 128.575 kb on - strand, within GFF3922at 128.575 kb on - strand, within GFF3922at 128.697 kb on + strand, within GFF3922at 128.697 kb on + strand, within GFF3922at 128.697 kb on + strand, within GFF3922at 128.697 kb on + strand, within GFF3922at 128.697 kb on + strand, within GFF3922at 128.698 kb on - strand, within GFF3922at 128.698 kb on - strand, within GFF3922at 128.698 kb on - strand, within GFF3922at 128.698 kb on - strand, within GFF3922at 128.698 kb on - strand, within GFF3922at 128.703 kb on + strand, within GFF3922at 128.704 kb on - strand, within GFF3922at 128.721 kb on + strand, within GFF3922at 128.721 kb on + strand, within GFF3922at 128.721 kb on + strand, within GFF3922at 128.721 kb on + strand, within GFF3922at 128.853 kb on + strand, within GFF3922at 128.854 kb on - strand, within GFF3922at 128.854 kb on - strand, within GFF3922at 128.970 kb on + strand, within GFF3922at 128.971 kb on - strand, within GFF3922at 128.971 kb on - strand, within GFF3922at 128.971 kb on - strand, within GFF3922at 128.971 kb on - strand, within GFF3922at 129.060 kb on + strand, within GFF3922at 129.060 kb on + strand, within GFF3922at 129.060 kb on + strand, within GFF3922at 129.060 kb on + strand, within GFF3922at 129.060 kb on + strand, within GFF3922at 129.060 kb on + strand, within GFF3922at 129.061 kb on - strand, within GFF3922at 129.061 kb on - strand, within GFF3922at 129.061 kb on - strand, within GFF3922

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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126,421 + GFF3920 0.43 -2.0
126,422 - GFF3920 0.43 -0.5
126,447 + GFF3920 0.45 -1.2
126,447 + GFF3920 0.45 +1.2
126,447 + GFF3920 0.45 -0.3
126,448 - GFF3920 0.45 +1.3
126,448 - GFF3920 0.45 +1.0
126,448 - GFF3920 0.45 +0.4
126,448 - GFF3920 0.45 -2.5
126,448 - GFF3920 0.45 -1.5
126,448 - GFF3920 0.45 +1.5
126,513 + GFF3920 0.51 +2.0
126,513 + GFF3920 0.51 +0.4
126,514 - GFF3920 0.51 +3.6
126,514 - GFF3920 0.51 +1.5
126,540 + GFF3920 0.53 +2.7
126,541 - GFF3920 0.53 -0.4
126,541 - GFF3920 0.53 -0.8
126,717 + GFF3920 0.67 -0.8
126,717 + GFF3920 0.67 +1.0
126,717 + GFF3920 0.67 -2.3
126,718 - GFF3920 0.67 -2.1
126,718 - GFF3920 0.67 -1.2
126,718 - GFF3920 0.67 +1.8
126,733 - GFF3920 0.68 +1.1
126,733 - GFF3920 0.68 -0.4
126,849 + GFF3920 0.78 -2.3
126,849 + GFF3920 0.78 -2.1
126,849 + GFF3920 0.78 -0.0
126,849 + GFF3920 0.78 +1.3
126,849 + GFF3920 0.78 -2.0
126,849 + GFF3920 0.78 +1.0
126,849 + GFF3920 0.78 -1.9
126,850 - GFF3920 0.78 -2.1
126,850 - GFF3920 0.78 -1.9
126,850 - GFF3920 0.78 +0.4
126,850 - GFF3920 0.78 -0.8
126,850 - GFF3920 0.78 +1.1
126,850 - GFF3920 0.78 +0.1
126,850 - GFF3920 0.78 +0.3
126,850 - GFF3920 0.78 -0.5
126,850 - GFF3920 0.78 +1.6
126,850 - GFF3920 0.78 -1.7
126,850 - GFF3920 0.78 +0.3
126,850 - GFF3920 0.78 +2.0
126,927 + GFF3920 0.84 -0.9
126,927 + GFF3920 0.84 +2.0
126,927 + GFF3920 0.84 +0.2
126,928 - GFF3920 0.84 -0.6
126,928 - GFF3920 0.84 -0.5
126,928 - GFF3920 0.84 -0.1
127,160 - -0.0
127,232 - +0.5
127,294 + -1.3
127,294 + -0.2
127,294 + -1.8
127,295 - -1.6
127,295 - -0.3
127,295 - +0.5
127,295 - -1.2
127,295 - +1.5
127,295 - +0.1
127,295 - -2.7
127,420 + GFF3921 0.22 +0.4
127,420 + GFF3921 0.22 +0.0
127,420 + GFF3921 0.22 -1.5
127,421 - GFF3921 0.22 +1.6
127,451 - GFF3921 0.26 +0.4
127,452 + GFF3921 0.26 +0.4
127,452 + GFF3921 0.26 +0.9
127,452 + GFF3921 0.26 +1.1
127,452 + GFF3921 0.26 -1.8
127,453 - GFF3921 0.26 -0.3
127,453 - GFF3921 0.26 -0.6
127,492 + GFF3921 0.30 -1.5
127,493 - GFF3921 0.31 +0.7
127,591 + GFF3921 0.42 -1.5
127,724 - GFF3921 0.57 -0.8
127,724 - GFF3921 0.57 +0.4
127,724 - GFF3921 0.57 +1.4
127,741 + GFF3921 0.59 -1.3
127,741 + GFF3921 0.59 +2.0
127,742 - GFF3921 0.59 +0.2
127,994 - GFF3921 0.89 -3.4
127,994 - GFF3921 0.89 +0.5
128,002 + GFF3921 0.90 +1.2
128,002 + GFF3921 0.90 +0.4
128,002 + GFF3921 0.90 -0.5
128,002 + GFF3921 0.90 -1.0
128,003 - GFF3921 0.90 -0.3
128,003 - GFF3921 0.90 -1.8
128,003 - GFF3921 0.90 -1.0
128,003 - GFF3921 0.90 +0.6
128,003 - GFF3921 0.90 +1.0
128,162 + +0.0
128,163 - -0.3
128,163 - +1.7
128,193 + -1.2
128,193 + +0.9
128,193 + -0.0
128,193 + -0.9
128,193 + -0.7
128,193 + -3.1
128,193 + +0.5
128,194 - +0.9
128,194 - -1.2
128,194 - -2.5
128,194 - -3.3
128,250 + GFF3922 0.13 +0.5
128,295 + GFF3922 0.16 -1.9
128,295 + GFF3922 0.16 -0.9
128,296 - GFF3922 0.16 -0.4
128,296 - GFF3922 0.16 +0.4
128,321 + GFF3922 0.18 +1.4
128,322 - GFF3922 0.18 -1.4
128,322 - GFF3922 0.18 -2.3
128,322 - GFF3922 0.18 -1.4
128,322 - GFF3922 0.18 -2.5
128,547 + GFF3922 0.36 -0.2
128,548 - GFF3922 0.36 -0.0
128,575 - GFF3922 0.38 +1.2
128,575 - GFF3922 0.38 -0.7
128,697 + GFF3922 0.48 -1.7
128,697 + GFF3922 0.48 -1.7
128,697 + GFF3922 0.48 -2.7
128,697 + GFF3922 0.48 +1.4
128,697 + GFF3922 0.48 +0.4
128,698 - GFF3922 0.48 +0.1
128,698 - GFF3922 0.48 -1.6
128,698 - GFF3922 0.48 -0.1
128,698 - GFF3922 0.48 -2.6
128,698 - GFF3922 0.48 -0.0
128,703 + GFF3922 0.48 +1.6
128,704 - GFF3922 0.48 +1.2
128,721 + GFF3922 0.50 -1.7
128,721 + GFF3922 0.50 -0.6
128,721 + GFF3922 0.50 +0.5
128,721 + GFF3922 0.50 -1.7
128,853 + GFF3922 0.60 -0.2
128,854 - GFF3922 0.60 +1.1
128,854 - GFF3922 0.60 +0.9
128,970 + GFF3922 0.69 -0.9
128,971 - GFF3922 0.69 -0.8
128,971 - GFF3922 0.69 +0.4
128,971 - GFF3922 0.69 +0.2
128,971 - GFF3922 0.69 -1.9
129,060 + GFF3922 0.76 -1.1
129,060 + GFF3922 0.76 -2.6
129,060 + GFF3922 0.76 -0.6
129,060 + GFF3922 0.76 +1.0
129,060 + GFF3922 0.76 +0.0
129,060 + GFF3922 0.76 -0.5
129,061 - GFF3922 0.76 -0.4
129,061 - GFF3922 0.76 -2.9
129,061 - GFF3922 0.76 +0.1

Or see this region's nucleotide sequence