Strain Fitness in Variovorax sp. SCN45 around GFF3903

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3901 and GFF3902 are separated by 12 nucleotidesGFF3902 and GFF3903 overlap by 4 nucleotidesGFF3903 and GFF3904 are separated by 34 nucleotidesGFF3904 and GFF3905 are separated by 80 nucleotides GFF3901 - Malate dehydrogenase (EC 1.1.1.37), at 102,793 to 103,779 GFF3901 GFF3902 - Trans-aconitate 2-methyltransferase (EC 2.1.1.144), at 103,792 to 104,583 GFF3902 GFF3903 - Similar to citrate lyase beta chain, 10, at 104,580 to 105,581 GFF3903 GFF3904 - Probable signal peptide protein, at 105,616 to 106,188 GFF3904 GFF3905 - Aconitate hydratase 2 (EC 4.2.1.3), at 106,269 to 108,854 GFF3905 Position (kb) 104 105 106Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 103.777 kb on + strandat 103.777 kb on + strandat 103.777 kb on + strandat 103.777 kb on + strandat 103.777 kb on + strandat 103.778 kb on - strandat 103.778 kb on - strandat 103.816 kb on + strandat 103.816 kb on + strandat 103.816 kb on + strandat 103.817 kb on - strandat 104.092 kb on + strand, within GFF3902at 104.092 kb on + strand, within GFF3902at 104.092 kb on + strand, within GFF3902at 104.092 kb on + strand, within GFF3902at 104.092 kb on + strand, within GFF3902at 104.093 kb on - strand, within GFF3902at 104.093 kb on - strand, within GFF3902at 104.093 kb on - strand, within GFF3902at 104.093 kb on - strand, within GFF3902at 104.311 kb on + strand, within GFF3902at 104.314 kb on + strand, within GFF3902at 104.314 kb on + strand, within GFF3902at 104.314 kb on + strand, within GFF3902at 104.314 kb on + strand, within GFF3902at 104.314 kb on + strand, within GFF3902at 104.314 kb on + strand, within GFF3902at 104.314 kb on + strand, within GFF3902at 104.315 kb on - strand, within GFF3902at 104.315 kb on - strand, within GFF3902at 104.315 kb on - strand, within GFF3902at 104.315 kb on - strand, within GFF3902at 104.365 kb on + strand, within GFF3902at 104.365 kb on + strand, within GFF3902at 104.365 kb on + strand, within GFF3902at 104.365 kb on + strand, within GFF3902at 104.365 kb on + strand, within GFF3902at 104.365 kb on + strand, within GFF3902at 104.365 kb on + strand, within GFF3902at 104.365 kb on + strand, within GFF3902at 104.366 kb on - strand, within GFF3902at 104.366 kb on - strand, within GFF3902at 104.366 kb on - strand, within GFF3902at 104.366 kb on - strand, within GFF3902at 104.366 kb on - strand, within GFF3902at 104.366 kb on - strand, within GFF3902at 104.366 kb on - strand, within GFF3902at 104.366 kb on - strand, within GFF3902at 104.366 kb on - strand, within GFF3902at 104.366 kb on - strand, within GFF3902at 104.366 kb on - strand, within GFF3902at 104.467 kb on + strand, within GFF3902at 104.467 kb on + strand, within GFF3902at 104.468 kb on - strand, within GFF3902at 104.468 kb on - strand, within GFF3902at 104.468 kb on - strand, within GFF3902at 104.468 kb on - strand, within GFF3902at 104.479 kb on + strand, within GFF3902at 104.480 kb on - strand, within GFF3902at 104.480 kb on - strand, within GFF3902at 104.661 kb on + strandat 104.661 kb on + strandat 104.661 kb on + strandat 104.662 kb on - strandat 104.662 kb on - strandat 104.662 kb on - strandat 104.662 kb on - strandat 104.662 kb on - strandat 104.662 kb on - strandat 105.112 kb on - strand, within GFF3903at 105.228 kb on + strand, within GFF3903at 105.228 kb on + strand, within GFF3903at 105.229 kb on - strand, within GFF3903at 105.229 kb on - strand, within GFF3903at 105.229 kb on - strand, within GFF3903at 105.421 kb on + strand, within GFF3903at 105.421 kb on + strand, within GFF3903at 105.421 kb on + strand, within GFF3903at 105.421 kb on + strand, within GFF3903at 105.421 kb on + strand, within GFF3903at 105.422 kb on - strand, within GFF3903at 105.422 kb on - strand, within GFF3903at 105.422 kb on - strand, within GFF3903at 105.422 kb on - strand, within GFF3903at 105.486 kb on + strandat 105.487 kb on - strandat 105.487 kb on - strandat 105.591 kb on + strandat 105.961 kb on + strand, within GFF3904at 105.961 kb on + strand, within GFF3904at 105.962 kb on - strand, within GFF3904at 106.186 kb on + strandat 106.186 kb on + strandat 106.186 kb on + strandat 106.187 kb on - strandat 106.187 kb on - strandat 106.187 kb on - strandat 106.187 kb on - strandat 106.187 kb on - strandat 106.187 kb on - strandat 106.192 kb on + strandat 106.281 kb on + strandat 106.281 kb on + strandat 106.281 kb on + strandat 106.282 kb on - strandat 106.420 kb on - strandat 106.467 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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103,777 + +0.0
103,777 + -1.3
103,777 + -0.0
103,777 + -0.8
103,777 + +3.1
103,778 - +1.3
103,778 - +0.4
103,816 + -1.1
103,816 + -3.0
103,816 + -0.3
103,817 - -1.3
104,092 + GFF3902 0.38 -1.0
104,092 + GFF3902 0.38 +0.0
104,092 + GFF3902 0.38 +1.0
104,092 + GFF3902 0.38 -1.3
104,092 + GFF3902 0.38 +4.7
104,093 - GFF3902 0.38 -0.6
104,093 - GFF3902 0.38 +0.3
104,093 - GFF3902 0.38 -0.6
104,093 - GFF3902 0.38 -2.0
104,311 + GFF3902 0.66 +1.7
104,314 + GFF3902 0.66 +1.0
104,314 + GFF3902 0.66 +2.3
104,314 + GFF3902 0.66 +0.0
104,314 + GFF3902 0.66 -2.7
104,314 + GFF3902 0.66 -2.7
104,314 + GFF3902 0.66 -0.8
104,314 + GFF3902 0.66 +0.4
104,315 - GFF3902 0.66 +4.8
104,315 - GFF3902 0.66 +0.0
104,315 - GFF3902 0.66 -1.6
104,315 - GFF3902 0.66 +1.0
104,365 + GFF3902 0.72 -1.3
104,365 + GFF3902 0.72 +1.1
104,365 + GFF3902 0.72 -1.5
104,365 + GFF3902 0.72 -1.2
104,365 + GFF3902 0.72 -2.1
104,365 + GFF3902 0.72 -2.2
104,365 + GFF3902 0.72 -3.4
104,365 + GFF3902 0.72 +1.0
104,366 - GFF3902 0.72 -0.6
104,366 - GFF3902 0.72 -0.3
104,366 - GFF3902 0.72 -1.6
104,366 - GFF3902 0.72 -3.0
104,366 - GFF3902 0.72 -0.7
104,366 - GFF3902 0.72 -0.0
104,366 - GFF3902 0.72 -0.3
104,366 - GFF3902 0.72 -1.1
104,366 - GFF3902 0.72 -1.8
104,366 - GFF3902 0.72 -0.3
104,366 - GFF3902 0.72 +1.6
104,467 + GFF3902 0.85 -0.1
104,467 + GFF3902 0.85 -2.1
104,468 - GFF3902 0.85 -2.1
104,468 - GFF3902 0.85 -0.2
104,468 - GFF3902 0.85 -1.3
104,468 - GFF3902 0.85 -1.5
104,479 + GFF3902 0.87 +2.6
104,480 - GFF3902 0.87 -1.4
104,480 - GFF3902 0.87 +1.4
104,661 + -2.4
104,661 + +0.0
104,661 + +0.9
104,662 - -4.3
104,662 - -2.0
104,662 - -2.6
104,662 - -1.7
104,662 - -1.7
104,662 - -1.7
105,112 - GFF3903 0.53 -2.6
105,228 + GFF3903 0.65 -1.0
105,228 + GFF3903 0.65 -0.7
105,229 - GFF3903 0.65 +0.3
105,229 - GFF3903 0.65 +0.4
105,229 - GFF3903 0.65 -2.2
105,421 + GFF3903 0.84 -0.2
105,421 + GFF3903 0.84 +2.0
105,421 + GFF3903 0.84 -0.0
105,421 + GFF3903 0.84 +0.1
105,421 + GFF3903 0.84 +1.0
105,422 - GFF3903 0.84 -1.0
105,422 - GFF3903 0.84 -0.9
105,422 - GFF3903 0.84 -0.4
105,422 - GFF3903 0.84 -0.3
105,486 + -1.2
105,487 - -2.9
105,487 - -1.2
105,591 + +0.4
105,961 + GFF3904 0.60 -1.8
105,961 + GFF3904 0.60 -2.2
105,962 - GFF3904 0.60 +0.9
106,186 + +0.8
106,186 + +2.0
106,186 + -3.2
106,187 - -2.3
106,187 - +1.0
106,187 - -3.4
106,187 - -1.3
106,187 - -1.4
106,187 - -0.0
106,192 + -0.6
106,281 + -1.9
106,281 + -4.2
106,281 + -0.8
106,282 - -1.2
106,420 - +2.0
106,467 + -2.7

Or see this region's nucleotide sequence