Strain Fitness in Variovorax sp. SCN45 around GFF3836

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
25,019	-				-3.2
25,019	-				-2.0
25,019	-				-0.0
25,019	-				-1.7
25,380	-		GFF3834	0.68	-1.8
25,468	+		GFF3834	0.84	+0.6
25,688	+		GFF3835	0.34	+0.7
25,688	+		GFF3835	0.34	-0.5
25,689	-		GFF3835	0.34	-0.6
25,689	-		GFF3835	0.34	-0.6
25,689	-		GFF3835	0.34	-2.3
26,001	-				-0.6
26,281	+				-1.3
26,281	+				+0.9
26,308	+				-1.2
26,308	+				-2.3
26,308	-				+1.0
26,309	-				+0.9
26,309	-				-0.3
26,309	-				-2.0
26,323	+				-1.2
26,323	+				-1.3
26,323	+				+1.0
26,324	-				+0.5
26,324	-				-0.6
26,345	-				+0.9
26,485	+				-2.2
26,486	-				+0.1
26,486	-				-1.0
26,530	+				+1.1
26,531	-				-1.0
27,067	+		GFF3836	0.13	-0.2
27,067	+		GFF3836	0.13	-2.3
27,067	+		GFF3836	0.13	-0.1
27,067	+		GFF3836	0.13	-0.6
27,068	-		GFF3836	0.13	+1.5
27,068	-		GFF3836	0.13	-3.1
27,068	-		GFF3836	0.13	+1.9
27,070	+		GFF3836	0.13	+1.7
27,070	+		GFF3836	0.13	+1.0
27,071	-		GFF3836	0.13	-0.2
27,071	-		GFF3836	0.13	-0.7
27,071	-		GFF3836	0.13	+0.7
27,160	+		GFF3836	0.14	-0.2
27,176	-		GFF3836	0.14	-0.2
27,421	+		GFF3836	0.17	-3.2
27,809	+		GFF3836	0.22	+0.7
28,053	-		GFF3836	0.25	-1.2
28,053	-		GFF3836	0.25	-0.0
28,054	+		GFF3836	0.25	-0.8
28,054	+		GFF3836	0.25	+1.0
28,054	+		GFF3836	0.25	+1.1
28,054	+		GFF3836	0.25	+0.9
28,054	+		GFF3836	0.25	-0.0
28,055	-		GFF3836	0.25	-2.3
28,055	-		GFF3836	0.25	+0.2
28,055	-		GFF3836	0.25	-1.7
28,055	-		GFF3836	0.25	+0.4
28,055	-		GFF3836	0.25	-0.1
28,153	+		GFF3836	0.26	+1.8
28,153	+		GFF3836	0.26	-1.2
28,153	+		GFF3836	0.26	+0.5
28,154	-		GFF3836	0.26	+1.2
28,154	-		GFF3836	0.26	-0.3
28,154	-		GFF3836	0.26	-1.6
28,154	-		GFF3836	0.26	-1.4
28,154	-		GFF3836	0.26	-1.7
28,307	+		GFF3836	0.28	-2.9
28,308	-		GFF3836	0.28	+0.5
28,585	+		GFF3836	0.31	-2.3
28,585	+		GFF3836	0.31	+0.1
28,585	+		GFF3836	0.31	+3.1
28,586	-		GFF3836	0.31	-0.6
28,586	-		GFF3836	0.31	-3.4
28,586	-		GFF3836	0.31	-0.1
28,681	+		GFF3836	0.33	+0.0
28,681	+		GFF3836	0.33	+0.0
28,682	-		GFF3836	0.33	-1.9
28,895	-		GFF3836	0.35	+0.4
28,895	-		GFF3836	0.35	-2.5
29,023	+		GFF3836	0.37	-1.6
29,023	+		GFF3836	0.37	+3.3
29,024	-		GFF3836	0.37	-2.6
29,024	-		GFF3836	0.37	+1.8
29,024	-		GFF3836	0.37	-0.1
29,024	-		GFF3836	0.37	-0.3
29,440	+		GFF3836	0.42	+0.3
29,440	+		GFF3836	0.42	+0.4
29,441	-		GFF3836	0.42	+2.2
29,541	+		GFF3836	0.43	+1.6
29,542	-		GFF3836	0.43	+3.6
29,542	-		GFF3836	0.43	+1.2
29,674	+		GFF3836	0.45	-1.8
29,674	+		GFF3836	0.45	-1.7
29,675	-		GFF3836	0.45	+1.4
29,675	-		GFF3836	0.45	+1.5
29,675	-		GFF3836	0.45	+0.1
29,689	+		GFF3836	0.45	-0.8
29,690	-		GFF3836	0.45	-1.3
29,782	+		GFF3836	0.46	+0.4
30,214	+		GFF3836	0.51	-1.9
30,283	+		GFF3836	0.52	-1.4
30,289	+		GFF3836	0.52	-1.0
30,317	-		GFF3836	0.53	+0.6
30,448	+		GFF3836	0.54	+1.1
30,448	+		GFF3836	0.54	-2.2
30,448	+		GFF3836	0.54	-1.5
30,449	-		GFF3836	0.54	-0.9
30,449	-		GFF3836	0.54	-1.0
30,601	+		GFF3836	0.56	+0.3
30,601	+		GFF3836	0.56	+0.6
30,602	-		GFF3836	0.56	-2.3
30,604	+		GFF3836	0.56	+0.7
30,604	+		GFF3836	0.56	-0.8
30,604	+		GFF3836	0.56	-2.5
30,605	-		GFF3836	0.56	-2.5
30,605	-		GFF3836	0.56	-2.5
30,605	-		GFF3836	0.56	-1.0
30,605	-		GFF3836	0.56	-2.3
30,605	-		GFF3836	0.56	+0.3
30,605	-		GFF3836	0.56	+0.2
30,670	+		GFF3836	0.57	-1.7
30,670	+		GFF3836	0.57	-0.3
30,670	+		GFF3836	0.57	+2.0
30,671	-		GFF3836	0.57	-0.6
30,838	+		GFF3836	0.59	-1.0
30,838	+		GFF3836	0.59	+1.4
30,838	+		GFF3836	0.59	+0.3
30,838	+		GFF3836	0.59	-1.2
30,838	+		GFF3836	0.59	+0.4
30,839	-		GFF3836	0.59	-0.3
30,839	-		GFF3836	0.59	-0.7
30,839	-		GFF3836	0.59	-1.0
30,839	-		GFF3836	0.59	+0.4
30,874	+		GFF3836	0.59	+0.4
31,003	+		GFF3836	0.61	+1.3
31,003	+		GFF3836	0.61	-0.3
31,003	+		GFF3836	0.61	-0.4
31,003	+		GFF3836	0.61	+1.1
31,003	+		GFF3836	0.61	-1.3
31,003	+		GFF3836	0.61	+0.5
31,004	-		GFF3836	0.61	-0.8
31,004	-		GFF3836	0.61	-0.6
31,004	-		GFF3836	0.61	-2.3
31,004	-		GFF3836	0.61	-0.0
31,004	-		GFF3836	0.61	+2.4
31,004	-		GFF3836	0.61	+0.5
31,004	-		GFF3836	0.61	-3.3
31,004	-		GFF3836	0.61	+0.6
31,147	+		GFF3836	0.63	+0.0
31,148	-		GFF3836	0.63	-0.0
31,148	-		GFF3836	0.63	-0.3
32,021	-		GFF3836	0.73	+0.4
32,021	-		GFF3836	0.73	-1.2
32,021	-		GFF3836	0.73	-1.3
32,021	-		GFF3836	0.73	-1.3
32,044	+		GFF3836	0.74	+1.0
32,269	+		GFF3836	0.77	+1.8
32,269	+		GFF3836	0.77	-0.7
32,269	+		GFF3836	0.77	+0.7
32,270	-		GFF3836	0.77	-0.3
32,270	-		GFF3836	0.77	+1.6
32,470	+		GFF3836	0.79	+0.9
32,470	+		GFF3836	0.79	-0.1
32,471	-		GFF3836	0.79	-3.2
32,471	-		GFF3836	0.79	-1.8
32,471	-		GFF3836	0.79	+1.9
32,818	-		GFF3836	0.83	+4.0
32,902	+		GFF3836	0.84	+0.1
32,902	+		GFF3836	0.84	+2.0
32,902	+		GFF3836	0.84	+1.2
32,902	+		GFF3836	0.84	+0.3
32,903	-		GFF3836	0.84	+2.2
32,903	-		GFF3836	0.84	+0.2
32,903	-		GFF3836	0.84	+2.0
33,028	+		GFF3836	0.86	-0.1
33,028	+		GFF3836	0.86	-0.3
33,028	+		GFF3836	0.86	-0.6
33,029	-		GFF3836	0.86	-0.7
33,029	-		GFF3836	0.86	+0.7
33,029	-		GFF3836	0.86	-1.8
33,029	-		GFF3836	0.86	-0.0
33,031	+		GFF3836	0.86	+1.0
33,031	+		GFF3836	0.86	-0.3
33,244	-		GFF3836	0.88	-1.5
33,454	+				-2.9
33,454	+				-1.8
33,454	+				+0.9
33,454	+				+0.6
33,454	+				-2.5
33,454	+				-2.4
33,454	+				+0.5
33,455	-				+1.3
33,455	-				-0.6
33,455	-				+0.6
33,455	-				-3.5
33,490	+				+1.4
33,491	-				-0.9
33,612	+				+0.5
33,612	+				+4.2
33,613	-				+2.2
33,676	+				-3.9
33,736	+				-3.8
33,736	+				+1.9
33,736	+				-0.1
33,737	+				-0.4
33,737	-				-0.7
33,737	-				+0.4
33,737	-				+1.7
33,737	-				+0.4
33,754	+				-1.2
33,755	-				+0.9
33,755	-				-1.0
33,755	-				-1.0
33,755	-				+1.6
33,809	-				+1.1
33,811	+				+0.5
33,811	+				-1.8
33,811	+				-1.2
33,811	+				+2.0
33,811	+				+1.0
33,812	-				-3.9
33,812	-				-0.3
33,812	-				-1.6
33,812	-				+0.9
33,901	+				+0.4
33,902	-				-1.7
33,902	-				+1.7
33,902	-				+1.1
33,902	-				-0.7
33,902	-				-3.1
33,932	-				-0.5
34,378	+				-1.8
34,416	+				-3.2
34,476	+				-3.4
34,477	-				-1.0
34,477	-				+0.3
34,486	+				-2.7
34,487	-				-2.3
34,515	+				+0.3
34,516	-				+0.5
34,516	-				+1.0
34,516	-				-2.3
34,699	+				-1.6
34,699	+				-0.8
34,699	+				-3.1
34,700	-				-1.7
34,700	-				-3.6
34,862	-		GFF3838	0.10	-1.6
34,904	-		GFF3838	0.12	-1.7
34,945	+		GFF3838	0.13	-0.8
34,945	+		GFF3838	0.13	-2.6
34,945	+		GFF3838	0.13	-1.0
34,945	+		GFF3838	0.13	-0.4
34,946	-		GFF3838	0.13	-1.0
34,946	-		GFF3838	0.13	+0.2
34,946	-		GFF3838	0.13	-3.8